AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
July 21, 2017 06:14PM
Dear Gang,

Sorry -- I replied to the wrong post.. I just attached the same post as a follow-up to your suggestion.

Thanks a lot for the suggestion. I see that centering would be a good option to remove the session effect (which is a within-ss covariate). I just have a few follow-up questions:
1) But for between-ss covariates, it is ok to residualize it (e.g., body mass on RT in case if the covariate is related to the overall grand mean across subjects)? Since the between-ss covariates still preserve the subject-wise differences, I presume it might be something similar to centering across subjects?
2) Would you still recommend using 3dLME framework after I center RTs or other ones like 3dMVM? My model specification for 3dLME is following:
y (brain) ~ treatment * cue * RT (centered) + body mass + session order + (1|subj)
-gltLabel 1 ‘DD_RT’ -gltCode 1 ‘treatment : 1*DD RT : ’ \
-gltLabel 2 ‘PC_RT’ -gltCode 2 ‘treatment : 1*PC RT : ’ \
-gltLabel 3 ‘treatment_x_RT’ -gltCode 3 ‘treatment : 1*DD -1*PC RT : ’ \

OR without any COVs:
y (brain) ~ treatment * cue * RT (centered) + (1|subj)…
and same GLTs as above.


Thank you so much for your help again. I really appreciate it.
Best, Michelle.
Subject Author Posted

Quantitative factor in LME (within-subjects conditions)

sjmich July 17, 2017 06:17PM

Re: Quantitative factor in LME (within-subjects conditions)

gang July 19, 2017 01:12AM

Re: Quantitative factor in LME (within-subjects conditions)

sjmich July 19, 2017 07:37PM

Re: Quantitative factor in LME (within-subjects conditions)

gang July 21, 2017 11:38AM

Re: Quantitative factor in LME (within-subjects conditions)

sjmich July 21, 2017 06:14PM

Re: Quantitative factor in LME (within-subjects conditions)

gang July 21, 2017 06:34PM