AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

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Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 24, 2017 11:48AM
Hi!

Quote
Gang
One thing needs clarification: Is the duration for each trial correlated (or confounded) with the pleasantness rating? If so, modulation analysis would be a little bit shaky.

Each Condition (A-D) has 3 onsets per run. They run 2 runs so each condition has a total of 6 onsets. Each onset has a fixed duration of 10 s (no correlated to pleasentness).

Quote
Gang
They would not be the same, but usually they should not differ too much either unless the ratings are very screwed.
Okey! Thanks.

Quote
Gang
Centering would only have impact on the interpretation of the first effect estimate (b0), not that of the rating effect (b1). When comparing b0 across A and C when centering across A and C, you get the difference of b0 between A and C when the pleasantness is held at the common mean of the ratings between A and C.
Not sure I understand why b1 is not affected by a different centering. b1 is the mean minus the rating, right?. If we have two conditions with 4 ratings:
ratings1: 4 4 6 6 (mean=5)
ratings2: 2 2 4 4 (mean=3)
In the case of the default (within) centering the b1 regressors would be (for rating - mean):
ratings1: 4-5 4-5 6-5 6-6 = -1 -1 1 1 (i.e. 4 bumps with amplitude 1)
ratings1: 2-3 2-3 4-3 4-3 = -1 -1 1 1 (i.e. 4 bumps with amplitude 1)
These two would be identical, even if the rating 1 was overall more pleasent.
In the case of acrosss condition centering the b1 regressors would be (for rating - mean):
Across cond mean = 5 +3 / 2 = 4
ratings1: 4-4 4-4 6-4 6-4 = 0 0 2 2 (i.e. 2 bumps with amplitude 2)
ratings1: 2-4 2-4 4-4 4-4 = -2 -2 0 0 (i.e.2 bumps with amplitude -2)
Here you can separate them. Where do I missunderstand this? Thanks!

I'm ofcoruse assuming you are right. So if centering does not matter for b1 then, when constrasting A and C, you would only find differencies if the ratings did not differ the same ammount from the within mean?

So, if they want to find voxels that correlate with rating they should simply compare b1 of e.g. A and C (they found nothing doing this btw)?

What would be the difference/prefered way: Doing this or using the ratings as covariats in the group analysis? Thanks a bunch Gang!



Edited 1 time(s). Last edit at 10/24/2017 01:04PM by Robin.
Subject Author Posted

Amplitude modulated stimfiles: Mean differences? Attachments

Robin October 10, 2017 07:56AM

Re: Amplitude modulated stimfiles: Mean differences?

rick reynolds October 10, 2017 09:32AM

Re: Amplitude modulated stimfiles: Mean differences?

Robin October 11, 2017 02:31AM

Re: Amplitude modulated stimfiles: Mean differences?

rick reynolds October 16, 2017 07:53PM

Re: Amplitude modulated stimfiles: Mean differences?

Robin October 17, 2017 06:40AM

Re: Amplitude modulated stimfiles: Mean differences?

rick reynolds October 18, 2017 01:59PM

Re: Amplitude modulated stimfiles: Mean differences?

gang October 18, 2017 06:05PM

Re: Amplitude modulated stimfiles: Mean differences?

Robin October 23, 2017 02:44PM

Re: Amplitude modulated stimfiles: Mean differences?

gang October 23, 2017 06:26PM

Re: Amplitude modulated stimfiles: Mean differences?

Robin October 24, 2017 11:48AM

Re: Amplitude modulated stimfiles: Mean differences?

gang October 25, 2017 09:26PM

Re: Amplitude modulated stimfiles: Mean differences?

Robin October 30, 2017 07:02AM

Re: Amplitude modulated stimfiles: Mean differences?

gang October 30, 2017 04:38PM

Re: Amplitude modulated stimfiles: Mean differences?

Robin October 30, 2017 05:37PM

Re: Amplitude modulated stimfiles: Mean differences?

gang October 30, 2017 05:52PM