Hi again, sorry to keep bugging about SUMA but I am having alot of trouble figuring out whats wrong with my datasets that are produced by my script. The script produced by afni_proc.py. runs its course with no fails. When i open afni and suma within the results folder I have volreg files in BRIK/HEAD formats. Past that my surf/blur/scale/ and stats files are all niml.dset. These files do not show up in afni window as i would expect. When I use CNTRL-s in suma window as specified in the suma website to load the niml.dset files i get this error (Error SUMA_ReadSegD0: Failed to read 1d file). i am currently unable to figure out what it is that im doing wrong, despite spending hours on google, suma website, and suma.pdf... I have looked into ConvertDset but dont really see anything that would necessarily solve this problem.
Here is the script generator im using, which i modeled after the example from earlier in this post, aside from the small portion for including standard meshes because whenever i add that bit for some reason afni_proc.py says that there is no match which I assume means I need to download those meshes despite the help file saying that @SUMA_Make_Spec_FS does it automatically... but one problem at a time i suppose
#run afni_proc.py to create a single subject processing script
afni_proc.py -subj_id $subj \
-script proc.$subj -scr_overwrite \
-blocks align volreg surf blur scale regress \
-copy_anat $anat_dir/E001_anat_nudge+orig \
-tcat_remove_first_trs 0 \
-dsets \
$epi_dir/E001_XY_r1_deobl+orig.HEAD \
$epi_dir/E001_XY_r2_deobl+orig.HEAD \
$epi_dir/E001_XY_r3_deobl+orig.HEAD \
$epi_dir/E001_XY_r4_deobl+orig.HEAD \
-surf_anat $top_dir/AFNI/SUMA/E001_SurfVol+orig \
-surf_spec $top_dir/AFNI/SUMA/E001_?h.spec \
-volreg_align_to third \
-volreg_align_e2a \
-blur_size 8.0 \
-regress_stim_times \
$top_dir/E001_corr_nogo.txt \
$top_dir/E001_err_nogo.txt \
-regress_stim_labels \
corr_nogo err_nogo \
-regress_basis 'GAM' \
-regress_censor_motion 0.3 \
-regress_opts_3dD \
-jobs 2 \
-gltsym 'SYM: corr_nogo -err_nogo'