Hi Nic,
I have not been able to reproduce this cmd.ap.subj error,
and you are using the current version of uber_subject.py.
What is even more confusing is your comment about running
stats.REML_cmd. There should not be any consideration of
$top_dir for that.
There were some edits made in uber_subject.py around that
time, but you seem to be current. Is there any way that
you can get an update, just to be sure? It would be easy
to get and run your own version, if that would help. I
would be happy to help and resolve this question.
- rick