Hi Rick,

Thank you for your answer!

I seem to have found a solution but don't quite understand why this works. Apparently, I need to source these scripts from within the proc script (i.e., the script generated by uber_subject.py):

source stats.REML_cmd (I also tried to chmod for this script from within the proc (without sourcing it) but this didn't help)
source ./@ss_review_basic > out.ss_review.$subj.txt (and comment out if ( -e @ss_review_basic ))
but I don't need to source
@auto_tlrc -base TT_N27+tlrc -init_xform AUTO_CENTER -input ${subj}_T1w_ns+orig -no_ss

I'm not too versed with these things but could it have to do with the different script headers?

proc script: #!/bin/tcsh -xef
@ss_review_basic: #!/bin/tcsh
while
@auto_tlrc: #!/bin/tcsh -f

Thank you very much and have a lovely day,

Nic