AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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vokuneye
January 17, 2018 05:58PM
There error I get is : Contrasts set to contr.sum for the following variables: P3Lev

Below is the scripts run....same as above but removing the wsVars line and removing the duplicate subjects/datasets from the DataTable

#./P3.MVM2_BD41R 2>&1 | tee output.P3.MVM2_BD41R
3dMVM_rcc -prefix P3_MVM2_BD41R -jobs 64 \
-bsVars 'P3Lev+Age' \
-qVars 'Age' \
-qVarCenters '38.38' \
-num_glt 6 \
-gltLabel 1 HCvNone -gltCode 1 'P3Lev : 1*HC -1*None' \
-gltLabel 2 HCvMod -gltCode 2 'P3Lev : 1*HC -1*Mod' \
-gltLabel 3 HCvSev -gltCode 3 'P3Lev : 1*HC -1*Sev' \
-gltLabel 4 NonevMod -gltCode 4 'P3Lev : 1*None -1*Mod' \
-gltLabel 5 NonevSev -gltCode 5 'P3Lev : 1*None -1*Sev' \
-gltLabel 6 ModvSev -gltCode 6 'P3Lev : 1*Mod -1*Sev' \
-dataTable @BD41R_DataTable_noWSvar.txt \

Subj wsDummy P3Lev Dx Bio Site Race Age Sex Gaf Hand InputFile \
4 1.00 Mod SADP 3 GP CA 19 1 70 2 /project/skeedy/BSNIP1/fromHartford/rest_2/Hartford/FunImgARCWF/S5366ACM1/BD41R_MNI_RScorr_Z+tlrc \
55 1.00 Mod SZP 999 GP CA 21 1 65 2 /project/skeedy/BSNIP1/fromHartford/rest_2/Hartford/FunImgARCWF/S0092JDO1/BD41R_MNI_RScorr_Z+tlrc \
86 1.00 HC HC 0 GP AA 46 2 80 2 /project/skeedy/BSNIP1/fromHartford/rest_2/Hartford/FunImgARCWF/S1122IJG3/BD41R_MNI_RScorr_Z+tlrc \
93 1.00 HC HC 0 GP AA 32 2 95 2 /project/skeedy/BSNIP1/fromHartford/rest_2/Hartford/FunImgARCWF/S4090DGW1/BD41R_MNI_RScorr_Z+tlrc \
94 1.00 HC HC 0 GP AA 49 2 90 2 /project/skeedy/BSNIP1/fromHartford/rest_2/Hartford/FunImgARCWF/S5446BQT8/BD41R_MNI_RScorr_Z+tlrc \
119 1.00 HC HC 0 GP CA 41 2 91 2 /project/skeedy/BSNIP1/fromHartford/rest_2/Hartford/FunImgARCWF/S8936WFE5/BD41R_MNI_RScorr_Z+tlrc \

......
9923 1.00 Mod SADP 1 CT CA 46 2 51 2 /project/skeedy/BSNIP1/fromHartford/rest_2/Dallas/FunImgARCWF/20080911_143441_S8320IGX1/BD41R_MNI_RScorr_Z+tlrc
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Subject Author Posted

running 3dMVM without wsVars????

vokuneye January 17, 2018 02:52PM

Re: running 3dMVM without wsVars????

gang January 17, 2018 04:59PM

Re: running 3dMVM without wsVars????

vokuneye January 17, 2018 05:58PM

Re: running 3dMVM without wsVars????

vokuneye January 17, 2018 06:19PM

Re: running 3dMVM without wsVars????

discoraj January 17, 2018 06:22PM