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Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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vokuneye
January 17, 2018 06:19PM
Looking at the other output files...I'm guess alone the line Contrasts set to contr.sum for the following variables: P3Lev does not indicate an error.


In the case of my "no wsVar" error...this line repeats over and over and over instead of beginning the computation, until I typically abort.

Example from unsuccessful output w/out wsVar:
***** End of data structure information *****
++++++++++++++++++++++++++++++++++++++++++++++++++++

Reading input files now...

If the program hangs here for more than, for example, half an hour,
kill the process because the model specification or the GLT coding
is likely inappropriate.

Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
Contrasts set to contr.sum for the following variables: P3Lev
......

Example from my successful output with the dummy wsVar:

***** End of data structure information *****
++++++++++++++++++++++++++++++++++++++++++++++++++++

Reading input files now...

If the program hangs here for more than, for example, half an hour,
kill the process because the model specification or the GLT coding
is likely inappropriate.

Contrasts set to contr.sum for the following variables: P3Lev
[1] "Great, test run passed at voxel (20, 36, 30)!"
[1] "Start to compute 61 slices along Z axis. You can monitor the progress"
[1] "and estimate the total run time as shown below."
[1] "01/09/18 13:05:53.060"
[1] "Rmpi and parallel loaded successfully"
[1] "INFO: Using 80 Processors"
80 slaves are spawned successfully. 0 failed.
[1] "INFO: Parallel R Cluster Created"
Z slice 1 done: 01/09/18 13:08:51.815
Z slice 2 done: 01/09/18 13:11:32.152
.......



Edited 1 time(s). Last edit at 01/17/2018 06:20PM by vokuneye.
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Subject Author Posted

running 3dMVM without wsVars????

vokuneye January 17, 2018 02:52PM

Re: running 3dMVM without wsVars????

gang January 17, 2018 04:59PM

Re: running 3dMVM without wsVars????

vokuneye January 17, 2018 05:58PM

Re: running 3dMVM without wsVars????

vokuneye January 17, 2018 06:19PM

Re: running 3dMVM without wsVars????

discoraj January 17, 2018 06:22PM