Dear gurus,
I'm running the following 3dttest++ command
3dttest++ \
-setA $INDIR/sub-*/*MNI*deconvolve*.nii.gz'[$BRICK]' \
-mask $BASEDIR/derivatives/unionmask/group/group_space-MNI152NLin2009cAsym_unionbrainmask.nii.gz \
-Clustsim \
-prefix $OUTDIR/clust_brick$BRICK\.nii.gz \
-prefix_clustsim clust_brick$BRICK
it finishes happily, and when I load the results in the AFNI GUI I can find all the p-values, etc. However, if I inspect the logs, I see these errors:
...
+ 3dttest++ ===== simulation jobs have finished (414.4 s elapsed)
** ERROR: Can't read file ./clust_brick122.0001.minmax.1D
** ERROR: Can't read file ./clust_brick122.0003.minmax.1D
** ERROR: Can't read file ./clust_brick122.0004.minmax.1D
** ERROR: Can't read file ./clust_brick122.0005.minmax.1D
** ERROR: Can't read file ./clust_brick122.0006.minmax.1D
** ERROR: Can't read file ./clust_brick122.0008.minmax.1D
** ERROR: Can't read file ./clust_brick122.0009.minmax.1D
** ERROR: Can't read file ./clust_brick122.0011.minmax.1D
** ERROR: Can't read file ./clust_brick122.0015.minmax.1D
+ 3dttest++ ===== starting 3dClustSim A: elapsed = 437.9 s
++ 3dClustSim: AFNI version=AFNI_17.3.09 (Dec 22 2017) [64-bit]
++ Authored by: RW Cox and BD Ward
++ Loading -insdat datasets
!
++ saving main effect t-stat MIN/MAX values in ./clust_brick122.0004.minmax.1D
!
++ saving main effect t-stat MIN/MAX values in ./clust_brick122.0001.minmax.1D
1++ output short-ized file ./clust_brick122.0004.sdat
++ output short-ized file ./clust_brick122.0001.sdat
!
++ saving main effect t-stat MIN/MAX values in ./clust_brick122.0008.minmax.1D
++ output short-ized file ./clust_brick122.0008.sdat
...
When the program is done, some *minmax.1D files remain (which interestingly are those that 3dttest++ complained it could not open):
[castello@discovery group]$ ls *minmax* | nl
1 clust_brick122.0001.minmax.1D
2 clust_brick122.0003.minmax.1D
3 clust_brick122.0004.minmax.1D
4 clust_brick122.0005.minmax.1D
5 clust_brick122.0006.minmax.1D
6 clust_brick122.0008.minmax.1D
7 clust_brick122.0009.minmax.1D
8 clust_brick122.0011.minmax.1D
9 clust_brick122.0015.minmax.1D
and they do contain stuff
[castello@discovery group]$ head clust_brick122.0001.minmax.1D
-4.27043 4.81231
-4.35104 3.87422
-4.16067 3.788
-3.69115 3.74613
-4.45349 4.16302
-4.63851 4.21939
-5.09003 4.42739
-4.3851 4.33245
-3.89163 4.43233
-4.07312 3.62941
I wonder if it's somehow a file system problem on our side...however I'm surprised that 3dttest++ continues with these errors. What should I do?
Thanks!
Matteo
P.S. here's the full log of 3dttest++. Apologies for the verbosity, but I'm running everything in a singularity container and I'm paranoid:
logttest.txt
