AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 01, 2018 04:44PM
The Eickhoff-Zilles 1.8 MPM atlas distributed with AFNI only has a few parts of the insula labeled (Ig1,Ig2, Id1), but surprisingly none covering the majority of the insula, while in their ML atlas for the N27 dataset, there is only the insula as a whole. The TT_desai_dd_mpm atlas and TT_desai_ddpmaps probabilstic atlas from Rutvik Desai and distributed with AFNI do have sub-divisions of the insula you might want to consider. Jurgen Mai's brain atlas has a large number of subdivisions for the insula that are well worth viewing, but that atlas is not yet available in a digital form. The Allen brain site includes three sub-divisions of the insula. You may be able to transform the atlas and corresponding single subject to Talairach space. The Brainnetome atlas provide six sub-divisions of the insula, and that atlas is downloadable and potentially useable in AFNI without too much effort, I think.

If you have an atlas in MNI space and a dataset aligned to the TT_N27 dataset, I would use the "adwarp" command, as mentioned in this previous thread.

https://afni.nimh.nih.gov/afni/community/board/read.php?1,155239,155244#msg-155244

The TT_N27 dataset itself was transformed manually from MNI space, and this would apply the same 12-piece transformation to the MNI space atlas.

One simple way to subdivide the insula is for you to do it yourself using a method like this one from another recent thread:

https://afni.nimh.nih.gov/afni/community/board/read.php?1,157456,157474#msg-157474

Also thanks for the new word for me - "ineluctability"! I have somehow *avoided* that word!
Subject Author Posted

Draw ROI in afni using atlases

Zhang Yu March 01, 2018 04:54AM

Re: Draw ROI in afni using atlases

Daniel Glen March 01, 2018 02:03PM

Re: Draw ROI in afni using atlases

Zhang Yu March 01, 2018 03:40PM

Re: Draw ROI in afni using atlases

Daniel Glen March 01, 2018 04:44PM

Re: Draw ROI in afni using atlases

Zhang Yu March 02, 2018 03:10AM

Re: Draw ROI in afni using atlases

Daniel Glen March 05, 2018 12:00PM

Re: Draw ROI in afni using atlases

Zhang Yu March 05, 2018 12:55PM

Re: Draw ROI in afni using atlases

Daniel Glen March 05, 2018 01:45PM

Brainnetome Atlas! Attachments

Daniel Glen March 05, 2018 06:37PM

Re: Brainnetome Atlas!

Zhang Yu March 09, 2018 04:36AM