AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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April 12, 2018 01:04PM
Dear AFNI experts,

I am sure it is possible, but I can not find a solution: how can I use my own brain mask (preferably '.nii', or '.nii.gz') in afni_proc.py? so that the analysis runs only within the mask and I do not calculate the brain mask via AFNI. Is it somehow related to '-mask_import'?

Sorry for bothering you!

Best regards,

Wiktor Olszowy
Subject Author Posted

using own brain mask in afni_proc.py

wo222 April 12, 2018 01:04PM

Re: using own brain mask in afni_proc.py

rick reynolds April 18, 2018 09:14AM