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April 12, 2018 01:04PM
Dear AFNI experts,

I am sure it is possible, but I can not find a solution: how can I use my own brain mask (preferably '.nii', or '.nii.gz') in afni_proc.py? so that the analysis runs only within the mask and I do not calculate the brain mask via AFNI. Is it somehow related to '-mask_import'?

Sorry for bothering you!

Best regards,

Wiktor Olszowy
Subject Author Posted

using own brain mask in afni_proc.py

wo222 April 12, 2018 01:04PM

Re: using own brain mask in afni_proc.py

rick reynolds April 18, 2018 09:14AM