AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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July 24, 2018 04:14AM
Dear Rick,

Thanks for your help and explanation, it really helps.

-How many time points are there?
Each trial lasted 8, 9 or 10 seconds and was divided in 3 within-trial events: “q” (3 sec), “c” (2, 3 or 4 sec) , “o” (3 sec).
For event “q” we had two possibilities/regressors (“qs” or “qo”), same for regressor “c” and for event “o” we had 4 possibilities/regressors (“ood”, “oou”, “osd”, “osu”). We had 32 trials per run (2 runs in total). TR=2.

-How many regressors in the TENT case?
I added as many regressors as I had for the dmBLOCK because it was my understanding that each within-trial event needed to be included (even though I’m mostly interested in what happened during event “o”). The text stimfiles for the TENT function consisted of one row per run with the event onsets in seconds. Here how it looks:

-stim_times 13 ${stim}/.. 'TENTzero(0,12,7)' -stim_label 13 'qo' \
-stim_times 14 ${stim}/.. 'TENTzero(0,12,7)' -stim_label 14 'qs' \
-stim_times 15 ${stim}/.. 'TENTzero(0,12,7)' -stim_label 15 'co' \
-stim_times 16 ${stim}/.. 'TENTzero(0,12,7)' -stim_label 16 'cs' \
-stim_times 17 ${stim}/.. 'TENTzero(0,12,7)' -stim_label 17 'ood' \
-stim_times 18 ${stim}/.. ’TENTzero(0,12,7)' -stim_label 18 'oou' \
-stim_times 19 ${stim}/.. ’TENTzero(0,12,7)' -stim_label 19 'osd' \
-stim_times 20 ${stim}/.. 'TENTzero(0,12,7)' -stim_label 20 'osu' \

Do you think that the duration was defined incorrectly? Should the duration relate to each regressor duration instead of the whole trial duration?

How "random" is the timing and ISI?
ISI was either 2, 3 or 4 seconds.

Thanks for your assistance!
Irene
Subject Author Posted

TENT results not consistent with GAMMA results Attachments

irepe June 14, 2018 04:34AM

Re: TENT results not consistent with GAMMA results

gang June 14, 2018 04:54PM

Re: TENT results not consistent with GAMMA results Attachments

irepe June 15, 2018 06:24AM

Re: TENT results not consistent with GAMMA results

rick reynolds June 15, 2018 01:55PM

Re: TENT results not consistent with GAMMA results

irepe July 19, 2018 08:18AM

Re: TENT results not consistent with GAMMA results

rick reynolds July 20, 2018 09:04AM

Re: TENT results not consistent with GAMMA results

irepe July 24, 2018 04:14AM

Re: TENT results not consistent with GAMMA results

rick reynolds July 24, 2018 01:24PM

Re: TENT results not consistent with GAMMA results Attachments

irepe July 25, 2018 05:58AM

Re: TENT results not consistent with GAMMA results

rick reynolds July 25, 2018 10:58AM

Re: TENT results not consistent with GAMMA results

irepe July 30, 2018 03:08AM