Thank you! I have a follow up question. Like I said earlier, I am trying to look at ICC across 3 runs of resting state fMRI data for 31 patients. When I run the 3dLME command, it gets killed early on. Is there a reason for this? Below the command and options I used, as well as the output:
3dLME -prefix test_31_patients_ICC_left_IFG \
-jobs 120 \
-model "1" \
-ranEff 'Cond+Subj' \
-ICC \
-dataTable \
Subj Cond InputFile \
p3 EO1 p3_left_IFG_rest_run1_Tcorr+tlrc \
p3 EC2 p3_left_IFG_rest_run2_Tcorr+tlrc \
p3 EC3 p3_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p25 EO1 p25_left_IFG_rest_run1_Tcorr+tlrc \
p25 EC2 p25_left_IFG_rest_run2_Tcorr+tlrc \
p25 EC3 p25_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p32 EO1 p32_left_IFG_rest_run1_Tcorr+tlrc \
p32 EC2 p32_left_IFG_rest_run2_Tcorr+tlrc \
p32 EC3 p32_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p33 EO1 p33_left_IFG_rest_run1_Tcorr+tlrc \
p33 EC2 p33_left_IFG_rest_run2_Tcorr+tlrc \
p33 EC3 p33_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p43 EO1 p43_left_IFG_rest_run1_Tcorr+tlrc \
p43 EC2 p43_left_IFG_rest_run2_Tcorr+tlrc \
p43 EC3 p43_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p47 EO1 p47_left_IFG_rest_run1_Tcorr+tlrc \
p47 EC2 p47_left_IFG_rest_run2_Tcorr+tlrc \
p47 EC3 p47_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p48 EO1 p48_left_IFG_rest_run1_Tcorr+tlrc \
p48 EC2 p48_left_IFG_rest_run2_Tcorr+tlrc \
p48 EC3 p48_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p64 EO1 p64_left_IFG_rest_run1_Tcorr+tlrc \
p64 EC2 p64_left_IFG_rest_run2_Tcorr+tlrc \
p64 EC3 p64_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p65 EO1 p65_left_IFG_rest_run1_Tcorr+tlrc \
p65 EC2 p65_left_IFG_rest_run2_Tcorr+tlrc \
p65 EC3 p65_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p67 EO1 p67_left_IFG_rest_run1_Tcorr+tlrc \
p67 EC2 p67_left_IFG_rest_run2_Tcorr+tlrc \
p67 EC3 p67_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p71 EO1 p71_left_IFG_rest_run1_Tcorr+tlrc \
p71 EC2 p71_left_IFG_rest_run2_Tcorr+tlrc \
p71 EC3 p71_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p73 EO1 p73_left_IFG_rest_run1_Tcorr+tlrc \
p73 EC2 p73_left_IFG_rest_run2_Tcorr+tlrc \
p73 EC3 p73_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p76 EO1 p76_left_IFG_rest_run1_Tcorr+tlrc \
p76 EC2 p76_left_IFG_rest_run2_Tcorr+tlrc \
p76 EC3 p76_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p82 EO1 p82_left_IFG_rest_run1_Tcorr+tlrc \
p82 EC2 p82_left_IFG_rest_run2_Tcorr+tlrc \
p82 EC3 p82_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p83 EO1 p83_left_IFG_rest_run1_Tcorr+tlrc \
p83 EC2 p83_left_IFG_rest_run2_Tcorr+tlrc \
p83 EC3 p83_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p86 EO1 p86_left_IFG_rest_run1_Tcorr+tlrc \
p86 EC2 p86_left_IFG_rest_run2_Tcorr+tlrc \
p86 EC3 p86_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p92 EO1 p92_left_IFG_rest_run1_Tcorr+tlrc \
p92 EC2 p92_left_IFG_rest_run2_Tcorr+tlrc \
p92 EC3 p92_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p96 EO1 p96_left_IFG_rest_run1_Tcorr+tlrc \
p96 EC2 p96_left_IFG_rest_run2_Tcorr+tlrc \
p96 EC3 p96_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p5 EO1 p5_left_IFG_rest_run1_Tcorr+tlrc \
p5 EC2 p5_left_IFG_rest_run2_Tcorr+tlrc \
p5 EC3 p5_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p14 EO1 p14_left_IFG_rest_run1_Tcorr+tlrc \
p14 EC2 p14_left_IFG_rest_run2_Tcorr+tlrc \
p14 EC3 p14_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p17 EO1 p17_left_IFG_rest_run1_Tcorr+tlrc \
p17 EC2 p17_left_IFG_rest_run2_Tcorr+tlrc \
p17 EC3 p17_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p40 EO1 p40_left_IFG_rest_run1_Tcorr+tlrc \
p40 EC2 p40_left_IFG_rest_run2_Tcorr+tlrc \
p40 EC3 p40_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p78 EO1 p78_left_IFG_rest_run1_Tcorr+tlrc \
p78 EC2 p78_left_IFG_rest_run2_Tcorr+tlrc \
p78 EC3 p78_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p79 EO1 p79_left_IFG_rest_run1_Tcorr+tlrc \
p79 EC2 p79_left_IFG_rest_run2_Tcorr+tlrc \
p79 EC3 p79_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p80 EO1 p80_left_IFG_rest_run1_Tcorr+tlrc \
p80 EC2 p80_left_IFG_rest_run2_Tcorr+tlrc \
p80 EC3 p80_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p85 EO1 p85_left_IFG_rest_run1_Tcorr+tlrc \
p85 EC2 p85_left_IFG_rest_run2_Tcorr+tlrc \
p85 EC3 p85_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p97 EO1 p97_left_IFG_rest_run1_Tcorr+tlrc \
p97 EC2 p97_left_IFG_rest_run2_Tcorr+tlrc \
p97 EC3 p97_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p23 EO1 p23_left_IFG_rest_run1_Tcorr+tlrc \
p23 EC2 p23_left_IFG_rest_run2_Tcorr+tlrc \
p23 EC3 p23_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p29 EO1 p29_left_IFG_rest_run1_Tcorr+tlrc \
p29 EC2 p29_left_IFG_rest_run2_Tcorr+tlrc \
p29 EC3 p29_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p12 EO1 p12_left_IFG_rest_run1_Tcorr+tlrc \
p12 EC2 p12_left_IFG_rest_run2_Tcorr+tlrc \
p12 EC3 p12_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p22 EO1 p22_left_IFG_rest_run1_Tcorr+tlrc \
p22 EC2 p22_left_IFG_rest_run2_Tcorr+tlrc \
p22 EC3 p22_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc
Output:
*+ WARNING: didn't find any environment equations in ~/.afnirc
Loading required package: lme4
Loading required package: Matrix
Package lme4 loaded successfully!
++++++++++++++++++++++++++++++++++++++++++++++++++++
***** Summary information of data structure *****
31 subjects : p12 p14 p17 p22 p23 p25 p29 p3 p32 p33 p40 p43 p47 p48 p5 p64 p65 p67 p71 p73 p76 p78 p79 p80 p82 p83 p85 p86 p92 p96 p97
93 response values
3 levels for factor Cond : EC2 EC3 EO1
0 post hoc tests
Contingency tables of subject distributions among the categorical variables:
***** End of data structure information *****
++++++++++++++++++++++++++++++++++++++++++++++++++++
Reading input files now...
Reading input files: Done!
If the program hangs here for more than, for example, half an hour,
kill the process because the model specification or the GLT coding
is likely inappropriate.
[1] "Great, test run passed at voxel (32, 57, 48)!"
[1] "Start to compute 96 slices along Z axis. You can monitor the progress"
[1] "and estimate the total run time as shown below."
[1] "09/18/18 15:39:36.897"
Loading required package: snow
Package snow loaded successfully!
Killed
Any thoughts?
