Hi Paul and Rick,
Thanks a bunch!
I tried to upgrade the R and also followed the steps from Paul, which could get the AFNI and SUMA work better, like 3dMVM fixs now.
But when I run the @SUMA_Make_Spec_FS script again, it still stopped and gave error information like:
+ @SUMA_Make_Spec_FS -fspath /Applications/freesurfer/subjects/CRF_S05_TPL -sid CRF_S05_TPL -NIFTI
++ Running @SUMA_Make_Spec_FS version: 2.2.1
** apparent failure to run mris_convert
mris_convert --help starts with:
dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address
Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib
Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: ___emutls_get_address
Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib
Expected in: /usr/lib/libSystem.B.dylib
Abort
---------------------------------------------------------
** if this requires SetUpFreeSurfer.csh, consider option:
-fs_setup
1 program(s) not found
program failure: exiting...
Then I added -fs_setup, it works now! So it's like something regarding fs. Should I re-install the freesurfer? Or need to set up anything more?
Many thanks,
S
