AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
January 09, 2019 09:52AM
Hi!

Preforming a fresh AFNi-install on CentOS which I have never worked on. The instructions worked great!

The only thing not surviving the afni_system_check -check_all is one R-package: brms. The rest were installed with rPkgsInstall -pkgs ALL.

I have tried some solutions I found online but with no success. This is the error message, any ideas?

> install.packages("brms")
Installing package into ‘/home/robka/R’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
also installing the dependencies ‘rstan’, ‘shinystan’

trying URL '[stat.ethz.ch];
Content type 'application/x-gzip' length 838052 bytes (818 KB)
==================================================
downloaded 818 KB

trying URL '[stat.ethz.ch];
Content type 'application/x-gzip' length 2400413 bytes (2.3 MB)
==================================================
downloaded 2.3 MB

trying URL '[stat.ethz.ch];
Content type 'application/x-gzip' length 3818402 bytes (3.6 MB)
==================================================
downloaded 3.6 MB

* installing *source* package ‘rstan’ ...
** package ‘rstan’ successfully unpacked and MD5 sums checked
** libs
Error in .shlib_internal(args) : 
  C++14 standard requested but CXX14 is not defined
* removing ‘/home/robka/R/rstan’
ERROR: dependency ‘rstan’ is not available for package ‘shinystan’
* removing ‘/home/robka/R/shinystan’
ERROR: dependencies ‘rstan’, ‘shinystan’ are not available for package ‘brms’
* removing ‘/home/robka/R/brms’

The downloaded source packages are in
	‘/tmp/RtmprXXqoJ/downloaded_packages’
Warning messages:
1: In install.packages("brms") :
  installation of package ‘rstan’ had non-zero exit status
2: In install.packages("brms") :
  installation of package ‘shinystan’ had non-zero exit status
3: In install.packages("brms") :
  installation of package ‘brms’ had non-zero exit status
>
Subject Author Posted

Fresh AFNI installation on CentOS: R package brms failes

Robin January 09, 2019 09:52AM

Re: Fresh AFNI installation on CentOS: R package brms failes

gang January 09, 2019 10:35AM

Re: Fresh AFNI installation on CentOS: R package brms failes

Robin January 10, 2019 04:54AM

Re: Fresh AFNI installation on CentOS: R package brms failes

gang January 10, 2019 06:29PM

Re: Fresh AFNI installation on CentOS: R package brms failes

Robin January 11, 2019 07:33AM

Re: Fresh AFNI installation on CentOS: R package brms failes

gang January 14, 2019 03:00PM