Hi there,
We are trying the new installation of AFNI and SUMA in our cluster and trying my scripts I got the next error:
@SUMA_Make_Spec_FS -NIFTI -fspath $SUBJECTS_DIR/$SUBJ -sid $SUBJ -debug 2
-- usage okay
if ( 0 ) set ldlist = ( )
if ( 0 == 0 && 2 != 0 ) then
set ldpref = ( )
foreach lldd ( 141 60 )
set ldpref = ( std.141. )
end
set ldpref = ( std.141. std.60. )
end
endif
if ( 2 != 0 && 2 != 2 ) then
set spec_files = ( {sub-006ParkAmrPm}_lh.spec {sub-006ParkAmrPm}_rh.spec )
set afni_prefix = sub-006ParkAmrPm_SurfVol
if ( -1 != -1 ) then
set afni_dataset = sub-006ParkAmrPm_SurfVol
endif
cd /scratch/vferrer/PARK_VFERRER//FREESURFER/sub-006ParkAmrPm
set start_dir = /dipc/vferrer/PARK_VFERRER/FREESURFER/sub-006ParkAmrPm
if ( 2 ) echo -- using start_dir '/dipc/vferrer/PARK_VFERRER/FREESURFER/sub-006ParkAmrPm'
echo -- using start_dir '/dipc/vferrer/PARK_VFERRER/FREESURFER/sub-006ParkAmrPm'
-- using start_dir '/dipc/vferrer/PARK_VFERRER/FREESURFER/sub-006ParkAmrPm'
goto L_PARSE_COMMAND_DONE
goto L_VERIFY_PROGRAMS
set failed_pgms = 0
foreach test_command ( afni to3d suma mris_convert )
if ( 0 ) then
end
if ( 0 ) then
end
if ( 0 ) then
end
if ( 0 ) then
end
if ( 0 ) then
foreach test_command ( afni mris_convert )
afni --version
if ( 127 ) then
echo program failure: afni
program failure: afni
@ failed_pgms ++
endif
end
mris_convert --version
if ( 0 ) then
end
if ( 1 ) then
set endstr = 1 program(s) not working correctly
goto L_BAD_END
echo
if ( 1 program(s) not working correctly != ) echo 1 program(s) not working correctly
echo 1 program(s) not working correctly
1 program(s) not working correctly
echo program failure: exiting...
program failure: exiting...
echo
exit
It seems that like @SUMA_Make_Spec_FS does not detect AFNI, do you know what could be the problem?
Thanks in advance,
Vicente.
