Hi Paul,
Thank you for your reply.
Yes, ROI mapping was based on the FreeSurfer non-linear registration to DKT atlas.
We converted DICOMs using dcm2nii command and run AFNI preprocessing with the nifti input to afni_proc.py
I ran @radial_correlate on the data and do not see a different pattern of correlations in both the acquisitions at 0.5 thresholds for the same subject data.
In addition, I preprocess the same subject with conn toolbox and I do not see much of a difference in the connectivity maps among the two acquisitions.
I assume I am missing an important step in the preprocessing of multiband data.
Any suggestion will be very helpful.
Thank you.
Naveed
Edited 1 time(s). Last edit at 02/12/2019 01:21PM by Naveed.
