AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
March 29, 2019 04:12PM
It looks to me that the orientations of your VASO datasets is not correct. With this partial data, it's hard to say what is correct, but the orientation might be LPS. You can reset that with 3drefit -orient LPS (better on a copy of the data, of course). Still, that might not be enough to solve this problem.Using affine transformations across software packages can be problematic because of differences in definitions. With lost information from the header, that can be very difficult to solve. You may want to stick with one software package all the way through transformations.
Subject Author Posted

cropped volume with 3dNwarpApply Attachments

marven March 20, 2019 11:45AM

Re: cropped volume with 3dNwarpApply

Daniel Glen March 20, 2019 02:11PM

Re: cropped volume with 3dNwarpApply Attachments

marven March 21, 2019 11:17AM

Re: cropped volume with 3dNwarpApply

Daniel Glen March 21, 2019 04:38PM

Re: cropped volume with 3dNwarpApply

marven March 22, 2019 09:30AM

Re: cropped volume with 3dNwarpApply

Daniel Glen March 29, 2019 04:12PM