Sorry for the delay, the code we used is below, it was run through matlab:
system(['3dVol2Surf -spec ' paths.vol.S2 'surfaces/TandonLang/' patient '/SUMA_std/std.125.' patient '_both.spec -surf_A rh.pial.asc -sv ' paths.vol.S2 patient '/afni/' patient '_anatr1_shifted_coords+orig.BRIK -grid_parent ' paths.vol.S2 patient '/afni/' patient 'v1mr+orig.BRIK -map_func mask -out_1D ' paths.vol.S2 patient '/afni/' patient '_R_v1mr_surface.1D']);
I'm not sure what you mean but going back, but as I said, the above code is what we are having trouble with.
Sorry again for taking so long to reply!
Thank you
