Hi pt,

Below is the result.

-------------------------------- general ---------------------------------

architecture: 64bit
system: Darwin
release: 16.7.0
version: Darwin Kernel Version 16.7.0: Wed Feb 27 00:29:57 PST 2019; root:xnu-3789.73.43~1/RELEASE_X86_64
distribution: 10.12.6 x86_64
number of CPUs: 12
apparent login shell: bash (current shell is csh)
shell RC file: .cshrc (exists)

--------------------- AFNI and related program tests ---------------------
which afni : /Users/titus/abin/afni
afni version : Precompiled binary macosx_10.7_local: Aug 28 2018

: AFNI_18.2.15

AFNI_version.txt : AFNI_18.2.15, macosx_10.7_local, Aug 28 2018

which python : /usr/bin/python

python version : 2.7.10

which R : /usr/local/bin/R

R version : R version 3.4.0 (2017-04-21) -- "You Stupid Darkness"

which tcsh : /bin/tcsh



instances of various programs found in PATH:

afni : 1 (/Users/titus/abin/afni)

R : 1 (/Library/Frameworks/R.framework/Versions/3.4/Resources/bin/R)

python : 1 (/usr/bin/python)

python2 : 0

python3 : 1 (/Library/Frameworks/Python.framework/Versions/3.7/bin/python3.7)



** have python3 but not python2



testing ability to start various programs...

afni : success

suma : success

3dSkullStrip : success

uber_subject.py : success

3dAllineate : success

3dRSFC : success

SurfMesh : success

3dClustSim : success



checking for R packages...

rPkgsInstall -pkgs ALL -check : success



checking for $HOME files...

.afnirc : found

.sumarc : found

.afni/help/all_progs.COMP : found



------------------------------ python libs -------------------------------

++ module 'PyQt4' found at /sw/lib/qt4-mac/lib/python2.7/site-packages/PyQt4

++ module loaded: PyQt4



** have PyQt4, but cannot load QtCore, QtGui; error is:



**************************************************

Traceback (most recent call last):

File "<string>", line 1, in <module>

ImportError: No module named sip

**************************************************





python binaries under /sw/bin:

/sw/bin/python (sym link to /sw/bin/python2.7)

/sw/bin/python2.7



-------------------------------- env vars --------------------------------

PATH = /usr/local/fsl/bin:/Applications/freesurfer/bin:/Applications/freesurfer/fsfast/bin:/Applications/freesurfer/tktools:/usr/local/fsl/bin:/Applications/freesurfer/mni/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/opt/X11/bin:/Users/titus/abin:/Users/titus/abin



PYTHONPATH = /sw/lib/qt4-mac/lib/python2.7/site-packages



R_LIBS =

LD_LIBRARY_PATH =

DYLD_LIBRARY_PATH = /opt/X11/lib/flat_namespace



DYLD_FALLBACK_LIBRARY_PATH (sub-shell) =



------------------------------ data checks -------------------------------

data dir : found AFNI_data6 under $HOME/afni_materials

top history: ... [rickr]: updated FT_white.nii w/out 16 (brain stem)

data dir : found AFNI_demos under $HOME/afni_materials

top history: ... [pault]: remove rank from FATCAT_DEMO, FAT_MVM_DEMO

data dir : found suma_demo under $HOME/afni_materials

top history: .../SUMA_data/Build_tmp on Wed Aug 20 10:04:23 EDT 2014

data dir : found afni_handouts under $HOME/afni_materials

atlas : found TT_N27+tlrc under ./



------------------------------ OS specific -------------------------------

which brew : /usr/local/bin/brew

brew version : Homebrew 1.7.3



++ found PyQt4 under /sw/lib/qt4-mac/lib/python2.7/site-packages

-- consider installing gcc under homebrew

-- consider installing glib under homebrew

++ found 1 dylib files under '/opt/X11/lib/flat_namespace'

-- found 'libXt' dylib files:

/opt/X11/lib/flat_namespace/libXt.6.dylib

++ yay, env var DYLD_LIBRARY_PATH contains /opt/X11/lib/flat_namespace



========================= summary, please fix: =========================

* login shell 'bash', trusting user to translate from 'tcsh'

* shell bash: consider sourcing (non-login) .bashrc from (login) .bash_profile

* check for partial install of PyQt4

* consider adding /sw/lib/qt4-mac/lib/python2.7/site-packages to PYTHONPATH