Hi JW,

I am a little confused by 2 aspects of this.

One is that you say suma is failing, yet the system_check output shows success with suma. Perhaps the test is not coming under bash, and so maybe the DYLD_LIBRARY_PATH problem is only causing problems in your login shell.


That brings up the other aspect. It looks like the FreeSurfer setup is breaking AFNI, because DYLD_LIBRARY_PATH points to a FreeSurfer directory, which is failing because of the difference in libSystem.B.dylib. But that begs the question, does FreeSurfer work?

I cannot evaluate some of this without a mac, so it will have to wait for tomorrow. In the meanwhile:

1. Can you run FreeSurfer programs successfully?
2. Does "3dAllineate -help" work?
3. Is it suma that is failing exactly like in your initial post?
Please repost the command and output, juuuuust to be sure.
4. If you first start tcsh (just run that command), can you then run suma?

Thanks,

- rick