I downloaded a directory of anatomical scans from an online dataset. I'm having an issue when I try to standardize these images from native space to MNI space. I have successfully used SSwarper in the past so I would like to know if my issue is more afni-related or with the scans I'm trying to process.
The script I used:
@SSwarper -input 1_MPRAGE+orig -base $File_Path/MNI152_2009_template_SSW.nii.gz -subid $subj_number
There's a cascade of errors in the process that result from junk.SSwarper.2ovuXrwwb3N_TAL5.nii not being output. I get a series of "can't open dataset ./junk.SSwarper.2ovuXrwwb3N_TAL5.nii " fatal errors. I tried double checking the terminal log with one of my successful uses of SSwarper and the main difference I see is during the 3dQwarp section. I get the following warning/errors in my failed unsuccessful attempts:
++ 3dQwarp: replacing source dataset with 3dAllineate result ./junk.SSwarper.2ovuXrwwb3N_TAL5_Allin.nii
+ 3dAllineate output files have been renamed
# mat44 3dAllineate matrix:
0.868885 0.003196 -0.021110 -246.061996
-0.022162 0.892608 0.201009 -270.204987
0.016392 -0.186738 0.811656 540.333008
++ Dataset zero-pad: xbot=549 xtop=548 ybot=543 ytop=552 zbot=549 ztop=543 voxels
*+ WARNING: At least one padding is more than 50% of dataset grid size!
*+ WARNING: Alignment of dataset grid centers might help a LOT: @Align_Centers
** ERROR: EDIT_volpad: Can't malloc space for new array
** ERROR: EDIT_volpad: Can't malloc space for new array
Fatal Signal 11 (SIGSEGV) received
3dQwarp
Bottom of Debug Stack
** AFNI version = AFNI_19.1.09 Compile date = May 17 2019
** [[Precompiled binary macos_10.12_local: May 17 2019]]
** Program Death **
I appreciate any help you could provide!
