AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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June 26, 2019 04:26PM
Thanks for the X-matrix.

Perhaps this is not a truncation issue, which would have been bad, given that all the times were nice multiples of 1.1. A truncation issue might be found if some regressors had very small maximums. But that is not the case here, they are all basically 1.

There might be near multicollinearity in the system, making the solution unstable. The main warning of this would come from 3dDeconvolve (and therefore afni_proc.py -> @ss_review_driver or the QC HTML pages). There should be screen output and a file called 3dDeconvolve.err that should complain about the condition number of the matrix (the ratio of the largest to smallest eigenvalue).

One thing you could try is changing TENT to TENTzero. Instead of having 27 regressors per class, you would drop to 25, with the assumption that the endpoints are zero. If this changes the results a lot, then multicollinearity is a concern.

Can you give that a try?

- rick
Subject Author Posted

Strange TENT Betas

s1110a June 22, 2019 05:24PM

Re: Strange TENT Betas

rick reynolds June 24, 2019 12:36PM

Re: Strange TENT Betas

s1110a June 24, 2019 02:04PM

Re: Strange TENT Betas

s1110a June 24, 2019 02:19PM

Re: Strange TENT Betas

rick reynolds June 24, 2019 04:36PM

Re: Strange TENT Betas

s1110a June 24, 2019 05:08PM

Re: Strange TENT Betas

rick reynolds June 25, 2019 09:15AM

Re: Strange TENT Betas

s1110a June 25, 2019 11:31AM

Re: Strange TENT Betas

s1110a June 26, 2019 10:53AM

Re: Strange TENT Betas

rick reynolds June 26, 2019 11:42AM

Re: Strange TENT Betas

rick reynolds June 26, 2019 04:26PM

Re: Strange TENT Betas

s1110a June 26, 2019 06:32PM

Re: Strange TENT Betas

s1110a June 29, 2019 01:38PM

Re: Strange TENT Betas

rick reynolds July 01, 2019 09:06AM

Re: Strange TENT Betas

s1110a July 01, 2019 11:27AM

Re: Strange TENT Betas

s1110a July 02, 2019 02:49PM

Re: Strange TENT Betas

rick reynolds July 02, 2019 04:01PM

Re: Strange TENT Betas

s1110a July 02, 2019 06:03PM