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Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Galit

September 09, 2019 05:00AM

Registered: 7 years ago
Posts: 59

Thank you, I extracted the slice times from the dicom header with matlab, and saved it as a text file (one row, numbers in seconds, no spaces or commas). I tried to run it as you suggested, with explicitly calling this text file:

3dTshift -tpattern @slice_times.txt -prefix S03_Run1.data.tshift S03_Run1.data+orig

But when I test the output using

3dinfo -slice_timing S03_Run1.data.tshift+orig

I still get just a list of zeros. I.e. no slice timing correction.
Any idea what might have went wrong?

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Subject	Author	Posted
slice-timing correction does not work with a multiband protocol	Galit	September 05, 2019 10:48AM
Re: slice-timing correction does not work with a multiband protocol	dowdlelt	September 05, 2019 08:25PM
Re: slice-timing correction does not work with a multiband protocol	Galit	September 09, 2019 05:00AM
Re: slice-timing correction does not work with a multiband protocol	Galit	September 09, 2019 07:40AM
Re: slice-timing correction does not work with a multiband protocol	rick reynolds	September 09, 2019 10:27AM
Re: slice-timing correction does not work with a multiband protocol	Galit	September 10, 2019 05:44AM
Re: slice-timing correction does not work with a multiband protocol	rick reynolds	September 10, 2019 09:07AM
Re: slice-timing correction does not work with a multiband protocol	Galit	September 10, 2019 09:53AM