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Galit

September 09, 2019 07:40AM

Registered: 7 years ago
Posts: 59

UPDATE:
I now tried to specify the tpattern first via 3dTshift:

3dTcat -tpattern @/media/galit/'Seagate Expansion Drive'/fMRI_GALIT/slice_times.1D -prefix S03_Run1.data.t S03_Run1.data+orig

Now when I ask for slice timing with 3dinfo, I get the timing vector and not just a list of zeros.

I apply 3sTshift on the output of 3dTcat:

3dTshift -tpattern @/media/galit/'Seagate Expansion Drive'/fMRI_GALIT/slice_times.1D -prefix S03_Run1.data.t.tshift S03_Run1.data.t+orig

(I used tpattern just in case, although as far as I understand I don't have to?)
Now when asking for slice timing info with 3dinfo - I get a vector of all zeros. So I assume slice timing now works, right?

In any event, I would be happy to know how I can skip the 3dTcat, and just call the tpattern file with 3dTshift. Thanks!

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Subject	Author	Posted
slice-timing correction does not work with a multiband protocol	Galit	September 05, 2019 10:48AM
Re: slice-timing correction does not work with a multiband protocol	dowdlelt	September 05, 2019 08:25PM
Re: slice-timing correction does not work with a multiband protocol	Galit	September 09, 2019 05:00AM
Re: slice-timing correction does not work with a multiband protocol	Galit	September 09, 2019 07:40AM
Re: slice-timing correction does not work with a multiband protocol	rick reynolds	September 09, 2019 10:27AM
Re: slice-timing correction does not work with a multiband protocol	Galit	September 10, 2019 05:44AM
Re: slice-timing correction does not work with a multiband protocol	rick reynolds	September 10, 2019 09:07AM
Re: slice-timing correction does not work with a multiband protocol	Galit	September 10, 2019 09:53AM