History of AFNI updates  

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March 22, 2020 10:09AM
Hi, Neuro-

The std.60* has a resolution typical of EPI data (~3mm edges) and the std.141* has resolution typical of anatomical data (~1mm edges). Again, these are quite approximate and not constant. So, you could repeat the above steps wtih std.141* surfs instead of std.60 ones---note that you can't mix the resolutions of the surfaces in different steps here!

... However, regarding the distance scale that you would like to resolve: umm, did you acquire your data at a super-high resolution? Most anatomical vols put into FS are acquired with a voxel size of about 1 mm isotropic voxels; maaaaybe some folks get 0.75 mm isotropic or slightly higher. And voxel size determines the minimal possible scale of distances you could measure, under *ideal* circumstances---note that all MRI has noise, and all algorithms are imperfect, sooo, I don't see how distances that are an order of magnitude (about 10 times) smaller than acquired voxel size could be resolved.

For the grey-white boundary, you might want the WM surface (std.*.white.gii) or the smoothed version of that (std.*.smoothwm.gii) instead of std.*.pial.gii; the numbers for either of those WM surfs will be quite similar.

--pt
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Distance between 2 coordinates via brain cortex

Neuro January 10, 2020 02:34AM

Re: Distance between 2 coordinates via brain cortex

ptaylor January 10, 2020 08:43AM

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Neuro January 23, 2020 06:09AM

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Neuro January 24, 2020 10:44AM

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Neuro January 25, 2020 04:33AM

Re: Distance between 2 coordinates via brain cortex

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Re: Distance between 2 coordinates via brain cortex

Neuro February 15, 2020 04:09AM

Re: Distance between 2 coordinates via brain cortex

ptaylor February 18, 2020 05:53AM

Re: Distance between 2 coordinates via brain cortex

Neuro March 07, 2020 05:10AM

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ptaylor March 08, 2020 04:30PM

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Neuro March 20, 2020 12:05PM

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ptaylor March 20, 2020 12:35PM

Re: Distance between 2 coordinates via brain cortex

Neuro March 20, 2020 09:09PM

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ptaylor March 21, 2020 08:26AM

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Neuro March 21, 2020 09:53PM

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ptaylor March 22, 2020 10:09AM

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Neuro March 30, 2020 11:45AM

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ptaylor March 30, 2020 11:57AM

Re: Distance between 2 coordinates via brain cortex

Neuro April 08, 2020 08:42PM