AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
February 07, 2020 10:57AM
Hi Rick,

I've adjusted the -amean and -adiff options. My exact script is pasted here again
3dANOVA2 -type 3 -alevels 6 -blevels 18		\
-dset 1 1 p101_DN+tlrc				\
-dset 2 1 p101_DW+tlrc				\
-dset 3 1 p101_DL+tlrc				\
-dset 4 1 p101_LN+tlrc				\
-dset 5 1 p101_LW+tlrc				\
-dset 6 1 p101_WN+tlrc				\
-dset 1 2 p03_DN+tlrc				\
-dset 2 2 p03_DW+tlrc				\
-dset 3 2 p03_DL+tlrc					\
-dset 4 2 p03_LN+tlrc					\
-dset 5 2 p03_LW+tlrc				\
-dset 6 2 p03_WN+tlrc				\
-dset 1 3 p04_DN+tlrc				\
-dset 2 3 p04_DW+tlrc				\
-dset 3 3 p04_DL+tlrc					\
-dset 4 3 p04_LN+tlrc					\
-dset 5 3 p04_LW+tlrc				\
-dset 6 3 p04_WN+tlrc				\
-dset 1 4 p05_DN+tlrc				\
-dset 2 4 p05_DW+tlrc				\
-dset 3 4 p05_DL+tlrc					\
-dset 4 4 p05_LN+tlrc 				\
-dset 5 4 p05_LW+tlrc				\
-dset 6 4 p05_WN+tlrc				\
-dset 1 5 p06_DN+tlrc				\
-dset 2 5 p06_DW+tlrc				\
-dset 3 5 p06_DL+tlrc					\
-dset 4 5 p06_LN+tlrc					\
-dset 5 5 p06_LW+tlrc				\
-dset 6 5 p06_WN+tlrc				\
-dset 1 6 p07_DN+tlrc				\
-dset 2 6 p07_DW+tlrc				\
-dset 3 6 p07_DL+tlrc					\
-dset 4 6 p07_LN+tlrc					\
-dset 5 6 p07_LW+tlrc				\
-dset 6 6 p07_WN+tlrc				\
-dset 1 7 p08_DN+tlrc				\
-dset 2 7 p08_DW+tlrc				\
-dset 3 7 p08_DL+tlrc					\
-dset 4 7 p08_LN+tlrc					\
-dset 5 7 p08_LW+tlrc				\
-dset 6 7 p08_WN+tlrc				\
-dset 1 8 p09_DN+tlrc				\
-dset 2 8 p09_DW+tlrc				\
-dset 3 8 p09_DL+tlrc					\
-dset 4 8 p09_LN+tlrc					\
-dset 5 8 p09_LW+tlrc				\
-dset 6 8 p09_WN+tlrc				\
-dset 1 9 p10_DN+tlrc				\
-dset 2 9 p10_DW+tlrc				\
-dset 3 9 p10_DL+tlrc					\
-dset 4 9 p10_LN+tlrc					\
-dset 5 9 p10_LW+tlrc				\
-dset 6 9 p10_WN+tlrc				\
-dset 1 10 p11_DN+tlrc				\
-dset 2 10 p11_DW+tlrc				\
-dset 3 10 p11_DL+tlrc				\
-dset 4 10 p11_LN+tlrc				\
-dset 5 10 p11_LW+tlrc				\
-dset 6 10 p11_WN+tlrc				\
-dset 1 11 p14_DN+tlrc				\
-dset 2 11 p14_DW+tlrc				\
-dset 3 11 p14_DL+tlrc				\
-dset 4 11 p14_LN+tlrc				\
-dset 5 11 p14_LW+tlrc				\
-dset 6 11 p14_WN+tlrc				\
-dset 1 12 p15_DN+tlrc				\
-dset 2 12 p15_DW+tlrc				\
-dset 3 12 p15_DL+tlrc				\
-dset 4 12 p15_LN+tlrc				\
-dset 5 12 p15_LW+tlrc				\
-dset 6 12 p15_WN+tlrc				\
-dset 1 13 p16_DN+tlrc				\
-dset 2 13 p16_DW+tlrc				\
-dset 3 13 p16_DL+tlrc				\
-dset 4 13 p16_LN+tlrc				\
-dset 5 13 p16_LW+tlrc				\
-dset 6 13 p16_WN+tlrc				\
-dset 1 14 p17_DN+tlrc				\
-dset 2 14 p17_DW+tlrc				\
-dset 3 14 p17_DL+tlrc				\
-dset 4 14 p17_LN+tlrc				\
-dset 5 14 p17_LW+tlrc				\
-dset 6 14 p17_WN+tlrc				\
-dset 1 15 p18_DN+tlrc				\
-dset 2 15 p18_DW+tlrc				\
-dset 3 15 p18_DL+tlrc				\
-dset 4 15 p18_LN+tlrc				\
-dset 5 15 p18_LW+tlrc				\
-dset 6 15 p18_WN+tlrc				\
-dset 1 16 p19_DN+tlrc				\
-dset 2 16 p19_DW+tlrc				\
-dset 3 16 p19_DL+tlrc				\
-dset 4 16 p19_LN+tlrc				\
-dset 5 16 p19_LW+tlrc				\
-dset 6 16 p19_WN+tlrc				\
-dset 1 17 p20_DN+tlrc				\
-dset 2 17 p20_DW+tlrc				\
-dset 3 17 p20_DL+tlrc				\
-dset 4 17 p20_LN+tlrc				\
-dset 5 17 p20_LW+tlrc				\
-dset 6 17 p20_WN+tlrc				\
-dset 1 18 p21_DN+tlrc				\
-dset 2 18 p21_DW+tlrc				\
-dset 3 18 p21_DL+tlrc				\
-dset 4 18 p21_LN+tlrc				\
-dset 5 18 p21_LW+tlrc				\
-dset 6 18 p21_WN+tlrc 				\
-amean 1 DN						\
-amean 2 DW						\
-amean 3 DL						\
-amean 4 LN						\
-amean 5 LW						\
-amean 6 WN						\
-adiff 1 3 DN_DL					\
-adiff 1 2 DN_DW					\
-adiff 4 5 LN_LW					\
-adiff 1 4 DN_LN					\
-adiff 1 6 DN_WN					\
-adiff 4 6 LN_WN					\
-fa FtestlevelA						\
-bucket grp2anova_blk_evt

I really have no idea why I am continuing to get the following error:
** ERROR: Unrecognized command line option: 1
Here's hoping these excerpts from '3dANOVA2 -help' enlighten:
'(1) chocolate, (2) glazed, (3) sugar'
'(1) fred, (2) ethel, (3) lucy, (4) ricky'
'-dset 1 1 filename : data set for level 1 of factor A'

I've triple checked to make sure that every relevant file is in the directory. I have both the HEAD and BRIK files for each of these levels and participants (i.e. there is p101_DN+tlrc.HEAD and p101_DN+tlrc.BRIK in the directory). Do I need both of these types of files, or only the HEAD files? If only one type is needed, maybe that is a problem?

Thank you,
Nicole
Subject Author Posted

3dANOVA fatal error

nstuart January 10, 2020 12:06PM

Re: 3dANOVA fatal error

rick reynolds January 12, 2020 12:58PM

Re: 3dANOVA fatal error

nstuart January 17, 2020 11:22AM

Re: 3dANOVA fatal error

nstuart January 17, 2020 12:45PM

Re: 3dANOVA fatal error

rick reynolds January 18, 2020 04:13PM

Re: 3dANOVA fatal error

nstuart January 21, 2020 11:37AM

Re: 3dANOVA fatal error

rick reynolds January 21, 2020 02:32PM

Re: 3dANOVA fatal error

nstuart January 24, 2020 11:09AM

Re: 3dANOVA fatal error

nstuart January 24, 2020 11:58AM

Re: 3dANOVA fatal error

rick reynolds January 24, 2020 03:46PM

Re: 3dANOVA fatal error

nstuart January 31, 2020 11:37AM

Re: 3dANOVA fatal error

rick reynolds January 31, 2020 06:44PM

Re: 3dANOVA fatal error

nstuart February 07, 2020 10:57AM

Re: 3dANOVA fatal error

nstuart February 07, 2020 11:02AM

Re: 3dANOVA fatal error

rick reynolds February 07, 2020 12:36PM

Re: 3dANOVA fatal error

nstuart February 14, 2020 11:02AM

Re: 3dANOVA fatal error

rick reynolds February 14, 2020 12:43PM

Re: 3dANOVA fatal error

nstuart February 27, 2020 10:36AM

Re: 3dANOVA fatal error

nstuart February 27, 2020 11:34AM

Re: 3dANOVA fatal error

rick reynolds February 27, 2020 01:53PM

Re: 3dANOVA fatal error

nstuart February 28, 2020 10:09AM

Re: 3dANOVA fatal error

rick reynolds February 28, 2020 10:28AM

Re: 3dANOVA fatal error

nstuart February 28, 2020 10:49AM

Re: 3dANOVA fatal error

rick reynolds February 28, 2020 01:25PM