AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 28, 2020 05:54AM
Hi,

I was trying to use the following script to map volume data to surface, but got some errors.

3dVol2Surf -spec ${wf}/${s}/anat/surface_info/SUMA/${s}_lh.spec \
-surf_A smoothwm \
-surf_B pial \
-sv ${s}_surf_volm_aligned+orig \
-grid_parent r06_detrend.nii.gz \
-map_func ave \
-f_steps 10 \
-f_index nodes \
-out_niml ${wf}/${s}/${thesession}/${thecond}/${s}_lvol2surf.niml.dset

Error SUMA_WriteDset_eng (suma_datasets.c:11050):
Failed to open stream
Error SUMA_WriteDset_eng (suma_datasets.c:102):
Failed to write niml element
Error SUMA_WriteDset_eng (suma_datasets.c:103):
Failed writing dataset.

I think there might be something wrong with the dataset of -sv or -grid_partent, but I'm not sure and I don't know how to fix the errors. Could anyone give me some tips? Thanks in advance !
Subject Author Posted

3dVol2Surf error

Dong February 28, 2020 05:54AM

Re: 3dVol2Surf error

rick reynolds February 28, 2020 08:15PM

Re: 3dVol2Surf error

Dong February 29, 2020 08:48AM

Re: 3dVol2Surf error

rick reynolds February 29, 2020 10:33AM

Re: 3dVol2Surf error

Dong March 01, 2020 10:34AM

Re: 3dVol2Surf error

rick reynolds March 01, 2020 12:40PM

Re: 3dVol2Surf error

Dong March 02, 2020 07:29AM