AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 02, 2020 07:29AM
Thanks! Following is the full script. BTW, I got another error if using the full path of surface data, please look at the end.

wf="/media/vpp/DATA/"
s=sbj05
thesession=pre
thecond='restingEyeClosed'
cd ${wf}/${s}/anat/surface_info/surf/

3dVol2Surf -spec ${wf}/${s}/anat/surface_info/SUMA/${s}_lh.spec \
-surf_A smoothwm \
-surf_B pial \
-sv ${wf}/${s}/${thesession}/result_$thecond/${s}_surf_volm_aligned+orig \
-grid_parent ${wf}/${s}/${thesession}/result_$thecond/r06_detrend.nii.gz \
-map_func nzave \
-f_steps 10 \
-f_index nodes \
-outcols_NSD_format \
-out_niml ${wf}/${s}/${thesession}/${thecond}/${s}_lvol2surf.niml.dset


## with full path
-surf_A ${wf}/${s}/anat/surface_info/surf/smoothwm \
-surf_B ${wf}/${s}/anat/surface_info/surf/pial \
** surface name '/media/vpp/DATA/sbj05/anat/surface_info/surf/smoothwm' not found

but the dataset lh.smoothwm, rh.smoothwm, lh.smoothwm.asc, rh.smoothwm.asc are all in surf directory.
.
Subject Author Posted

3dVol2Surf error

Dong February 28, 2020 05:54AM

Re: 3dVol2Surf error

rick reynolds February 28, 2020 08:15PM

Re: 3dVol2Surf error

Dong February 29, 2020 08:48AM

Re: 3dVol2Surf error

rick reynolds February 29, 2020 10:33AM

Re: 3dVol2Surf error

Dong March 01, 2020 10:34AM

Re: 3dVol2Surf error

rick reynolds March 01, 2020 12:40PM

Re: 3dVol2Surf error

Dong March 02, 2020 07:29AM