AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
April 04, 2020 12:57PM
Hi Paul,

First point:
You are right. This produces an error:
3dBrickStat -slow -min -max C01_2_t1_tl+tlrc

*** failure while reading from brick file ./C01_2_t1_tl+tlrc.BRIK
*** desired 17060042 bytes but only got 1805258
*** Unix error message: Undefined error: 0
THD_load_datablock
Max_func
3dBrickStat main
** Command line was:
3dBrickStat -slow -min -max C01_2_t1_tl+tlrc

Fatal Signal 11 (SIGSEGV) received
Max_func
3dBrickStat main
Bottom of Debug Stack
** Command line was:
3dBrickStat -slow -min -max C01_2_t1_tl+tlrc
** AFNI version = AFNI_20.0.23 Compile date = Mar 27 2020
** [[Precompiled binary macos_10.12_local: Mar 27 2020]]
** Program Death **
** If you report this crash to the AFNI message board,
** please copy the error messages EXACTLY, and give
** the command line you used to run the program, and
** any other information needed to repeat the problem.
** You may later be asked to upload data to help debug.
** Crash log is appended to file /Users/bl/.afni.crashlog

Second point:
I don't have a particular reason for using @auto_tlrc and outside the afni_proc.py for these epi runs, so I will check the @SSwarper. Thank you!
However, I have a separate set of epi runs for representational similarity analysis, so for those datasetsI need to do preprocessing and GLM in native space and then do RSA searchlight for each individual subject. After that. I will need to normalize the searchlight results to standard space. Is it appropriate to use @auto_tlrc in that situation?

Thank you very much!

-Joy
Subject Author Posted

problems with warping functional dataset to standard space

joy0617 April 04, 2020 09:15AM

Re: problems with warping functional dataset to standard space

ptaylor April 04, 2020 10:00AM

Re: problems with warping functional dataset to standard space

joy0617 April 04, 2020 12:57PM

Re: problems with warping functional dataset to standard space

joy0617 April 04, 2020 08:01PM

Re: problems with warping functional dataset to standard space

joy0617 April 05, 2020 12:40PM

Re: problems with warping functional dataset to standard space

ptaylor April 05, 2020 09:41PM

Re: problems with warping functional dataset to standard space

joy0617 April 06, 2020 05:00PM

Re: problems with warping functional dataset to standard space

ptaylor April 07, 2020 10:18AM

Re: problems with warping functional dataset to standard space

abdollahis2 January 15, 2021 10:45AM