Hi Pual,

I tried @SSwarper script but got error messages about starting Xvfb like these:

++ SSW Step 7
-- trying to start Xvfb :177
[1] 6174
[1] + Exit 1 Xvfb :177 -screen 0 1024x768x24 >& /dev/null
No matching processes belonging to you were found
...
-- trying to start Xvfb :957
[1] 6338
[1] + Exit 1 Xvfb :957 -screen 0 1024x768x24 >& /dev/null
No matching processes belonging to you were found
** ERROR: can't start Xvfb -- exiting

...

\n------------------- end of optionizing -------------------\n
-- trying to start Xvfb :115
[1] 6526
_XSERVTransmkdir: ERROR: euid != 0,directory /tmp/.X11-unix will not be created.
_XSERVTransSocketUNIXCreateListener: mkdir(/tmp/.X11-unix) failed, errno = 2
_XSERVTransMakeAllCOTSServerListeners: failed to create listener for local
(EE)
Fatal server error:
(EE) Cannot establish any listening sockets - Make sure an X server isn't already running(EE)
[1] + Exit 1 Xvfb :115 -screen 0 1024x768x24

Do you know how to fix the problem?
In the end the output it suggests me to check the QC images but I couldn't find them in the directory.

Here is the script I ran:
set btemplate = MNI152_2009_template_SSW.nii.gz
set tpath = `@FindAfniDsetPath ${btemplate}`
if( "$tpath" == "" ) exit 1
set subj = C01
@SSwarper \
-input {$subj}_2_t1+orig \
-base $btemplate \
-subid $subj \


Thank you!

Joy