AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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June 08, 2020 10:52AM
Hi all,

I have a binary ROI in the original space that I had created using freesurfer. Now I'm using 3dallienate to transform it to tlrc space, but I don't get the tlrc ROI in the right location. Here's the line that I'm using:
3dAllineate -prefix stand_ROI -input ROI.nii -master anat_w_skull_warped+tlrc. -1Dmatrix_apply warp.anat.Xat.1D -final NN

I'm guessing that I'm not using the right matrix (warp.anat.Xat.1D). Is that the problem?

Thanks,
Ana
Subject Author Posted

ROI in orig to tlrc

Ana Navarro Cebrian June 08, 2020 10:52AM

Re: ROI in orig to tlrc

ptaylor June 08, 2020 11:49AM

Re: ROI in orig to tlrc

Ana Navarro Cebrian June 08, 2020 12:48PM

Re: ROI in orig to tlrc

rick reynolds June 08, 2020 01:44PM

Re: ROI in orig to tlrc

Ana Navarro Cebrian June 10, 2020 12:34PM