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dani2

June 13, 2020 03:22PM

Registered: 3 years ago
Posts: 17

Hello -
I am running 3dLME to assess whether PCC functional connectivity changes across task (within-subject); correlates with a between-subject continuous variable of negative urgency (Negurg_mc); and whether there is interaction between the two. I wanted to use 3dMVM, but I have a mean framewise displacement measure for each task, which would be a within-person continuous variable, so I think that makes 3dLME the preferable choice (based on 3dMVM documentation). Anyway, I have the overall model running, but for some reason the gltCode contrasts with the variable "Task" are giving the error "Incorrect level coding in variable Task". Here is my code (I have 108 subjects, but am only showing the first 10 here for brevity - but for each of 6 task runs). Any thoughts as to what I am doing wrong? (Also - I am showing all of my contrasts here - but even the simplest task contrast, gltcode 1, was not working.)
Thanks so much in advance for your help!
Best,
Dani

3dLME -prefix 3dLME_iFC_PCC_NegUrg_Task_200612 -jobs 24 \
-model "Task*Negurg_mc+FD+Gender+Age+IQ" \
-qVars "Negurg_mc,FD,Age,IQ" \
-ranEff '~1' \
-SS_type 3 \
-resid 3dLME_iFC_PCC_NegUrg_Task_200612_residuals \
-num_glt 9 \
-gltLabel 1 'rsFC' -gltCode 1 'Task : 1*rest' \
-gltLabel 2 'Negurg_mc' -gltCode 2 'Negurg_mc : ' \
-gltLabel 3 'Negurg_mc_rsFC' -gltCode 3 'Negurg_mc : Task : 1*rest' \
-gltLabel 4 'efnback_vs_rest' -gltCode 4 'Task : 1*efnback1 + 1*efnback2 - 2*rest' \
-gltLabel 5 'dynface_vs_rest' -gltCode 5 'Task : 1*dynface - 1*rest' \
-gltLabel 6 'reward_vs_rest' -gltCode 6 'Task : 1*reward1 + 1*reward2 - 2*rest' \
-gltLabel 7 'Negurg_mc-efnback_vs_rest' -gltCode 7 'Negurg_mc : Task : 1*efnback1 + 1*efnback2 - 2*rest' \
-gltLabel 8 'Negurg_mc-dynface_vs_rest' -gltCode 8 'Negurg_mc : Task : 1*dynface - 1*rest' \
-gltLabel 9 'Negurg_mc-reward_vs_rest' -gltCode 9 'Negurg_mc : 1*reward1 + 1*reward2 - 2*rest' \
-dataTable \
Subj Task FD Negurg_mc Gender Age IQ InputFile \
10170 dynface 0.1719341 -0.961838 0 19.67 107.52 /sub-10170/ses-1/dynface/seed/PCC/sub-10170_ses-1_dynface_connectivity_PCC_sm4.nii.gz \
10181 dynface 0.1460089 1.538162 1 24.23 95.04 /sub-10181/ses-1/dynface/seed/PCC/sub-10181_ses-1_dynface_connectivity_PCC_sm4.nii.gz \
10183 dynface 0.1261234 -0.545171 0 18.13 109.86 /sub-10183/ses-1/dynface/seed/PCC/sub-10183_ses-1_dynface_connectivity_PCC_sm4.nii.gz \
10185 dynface 0.1781824 -0.295171 0 22.02 102.84 /sub-10185/ses-1/dynface/seed/PCC/sub-10185_ses-1_dynface_connectivity_PCC_sm4.nii.gz \
10186 dynface 0.2317186 0.038162 0 21.93 112.98 /sub-10186/ses-1/dynface/seed/PCC/sub-10186_ses-1_dynface_connectivity_PCC_sm4.nii.gz \
10187 dynface 0.2848334 -0.128504 0 24.53 112.2 /sub-10187/ses-1/dynface/seed/PCC/sub-10187_ses-1_dynface_connectivity_PCC_sm4.nii.gz \
10190 dynface 0.1781185 0.788162 1 22.29 111.42 /sub-10190/ses-1/dynface/seed/PCC/sub-10190_ses-1_dynface_connectivity_PCC_sm4.nii.gz \
10192 dynface 0.09225709 0.704829 1 19.07 112.98 /sub-10192/ses-1/dynface/seed/PCC/sub-10192_ses-1_dynface_connectivity_PCC_sm4.nii.gz \
***
10170 efnback1 0.1480631 -0.961838 0 19.67 107.52 /sub-10170/ses-1/efnback1/seed/PCC/sub-10170_ses-1_efnback1_connectivity_PCC_sm4.nii.gz \
10181 efnback1 0.1208365 1.538162 1 24.23 95.04 /sub-10181/ses-1/efnback1/seed/PCC/sub-10181_ses-1_efnback1_connectivity_PCC_sm4.nii.gz \
10183 efnback1 0.1109983 -0.545171 0 18.13 109.86 /sub-10183/ses-1/efnback1/seed/PCC/sub-10183_ses-1_efnback1_connectivity_PCC_sm4.nii.gz \
10185 efnback1 0.1776716 -0.295171 0 22.02 102.84 /sub-10185/ses-1/efnback1/seed/PCC/sub-10185_ses-1_efnback1_connectivity_PCC_sm4.nii.gz \
10186 efnback1 0.188915 0.038162 0 21.93 112.98 /sub-10186/ses-1/efnback1/seed/PCC/sub-10186_ses-1_efnback1_connectivity_PCC_sm4.nii.gz \
10187 efnback1 0.1588672 -0.128504 0 24.53 112.2 /sub-10187/ses-1/efnback1/seed/PCC/sub-10187_ses-1_efnback1_connectivity_PCC_sm4.nii.gz \
10190 efnback1 0.1601658 0.788162 1 22.29 111.42 /sub-10190/ses-1/efnback1/seed/PCC/sub-10190_ses-1_efnback1_connectivity_PCC_sm4.nii.gz \
10192 efnback1 0.1155213 0.704829 1 19.07 112.98 /sub-10192/ses-1/efnback1/seed/PCC/sub-10192_ses-1_efnback1_connectivity_PCC_sm4.nii.gz \
***
10170 efnback2 0.1597939 -0.961838 0 19.67 107.52 /sub-10170/ses-1/efnback2/seed/PCC/sub-10170_ses-1_efnback2_connectivity_PCC_sm4.nii.gz \
10181 efnback2 0.1313662 1.538162 1 24.23 95.04 /sub-10181/ses-1/efnback2/seed/PCC/sub-10181_ses-1_efnback2_connectivity_PCC_sm4.nii.gz \
10183 efnback2 0.1591725 -0.545171 0 18.13 109.86 /sub-10183/ses-1/efnback2/seed/PCC/sub-10183_ses-1_efnback2_connectivity_PCC_sm4.nii.gz \
10185 efnback2 0.165841 -0.295171 0 22.02 102.84 /sub-10185/ses-1/efnback2/seed/PCC/sub-10185_ses-1_efnback2_connectivity_PCC_sm4.nii.gz \
10186 efnback2 0.2099927 0.038162 0 21.93 112.98 /sub-10186/ses-1/efnback2/seed/PCC/sub-10186_ses-1_efnback2_connectivity_PCC_sm4.nii.gz \
10187 efnback2 0.2954463 -0.128504 0 24.53 112.2 /sub-10187/ses-1/efnback2/seed/PCC/sub-10187_ses-1_efnback2_connectivity_PCC_sm4.nii.gz \
10190 efnback2 0.2049725 0.788162 1 22.29 111.42 /sub-10190/ses-1/efnback2/seed/PCC/sub-10190_ses-1_efnback2_connectivity_PCC_sm4.nii.gz \
10192 efnback2 0.08825511 0.704829 1 19.07 112.98 /sub-10192/ses-1/efnback2/seed/PCC/sub-10192_ses-1_efnback2_connectivity_PCC_sm4.nii.gz \
***
10170 rest 0.1499741 -0.961838 0 19.67 107.52 /sub-10170/ses-1/rest/seed/PCC/sub-10170_ses-1_rest_connectivity_PCC_sm4.nii.gz \
10181 rest 0.1320589 1.538162 1 24.23 95.04 /sub-10181/ses-1/rest/seed/PCC/sub-10181_ses-1_rest_connectivity_PCC_sm4.nii.gz \
10183 rest 0.1530713 -0.545171 0 18.13 109.86 /sub-10183/ses-1/rest/seed/PCC/sub-10183_ses-1_rest_connectivity_PCC_sm4.nii.gz \
10185 rest 0.1518534 -0.295171 0 22.02 102.84 /sub-10185/ses-1/rest/seed/PCC/sub-10185_ses-1_rest_connectivity_PCC_sm4.nii.gz \
10186 rest 0.2191214 0.038162 0 21.93 112.98 /sub-10186/ses-1/rest/seed/PCC/sub-10186_ses-1_rest_connectivity_PCC_sm4.nii.gz \
10187 rest 0.1705034 -0.128504 0 24.53 112.2 /sub-10187/ses-1/rest/seed/PCC/sub-10187_ses-1_rest_connectivity_PCC_sm4.nii.gz \
10190 rest 0.1648329 0.788162 1 22.29 111.42 /sub-10190/ses-1/rest/seed/PCC/sub-10190_ses-1_rest_connectivity_PCC_sm4.nii.gz \
10192 rest 0.08214958 0.704829 1 19.07 112.98 /sub-10192/ses-1/rest/seed/PCC/sub-10192_ses-1_rest_connectivity_PCC_sm4.nii.gz \
***
10170 reward1 0.1550091 -0.961838 0 19.67 107.52 /sub-10170/ses-1/reward1/seed/PCC/sub-10170_ses-1_reward1_connectivity_PCC_sm4.nii.gz \
10181 reward1 0.1154455 1.538162 1 24.23 95.04 /sub-10181/ses-1/reward1/seed/PCC/sub-10181_ses-1_reward1_connectivity_PCC_sm4.nii.gz \
10183 reward1 0.1430183 -0.545171 0 18.13 109.86 /sub-10183/ses-1/reward1/seed/PCC/sub-10183_ses-1_reward1_connectivity_PCC_sm4.nii.gz \
10185 reward1 0.1726241 -0.295171 0 22.02 102.84 /sub-10185/ses-1/reward1/seed/PCC/sub-10185_ses-1_reward1_connectivity_PCC_sm4.nii.gz \
10186 reward1 0.2414529 0.038162 0 21.93 112.98 /sub-10186/ses-1/reward1/seed/PCC/sub-10186_ses-1_reward1_connectivity_PCC_sm4.nii.gz \
10187 reward1 0.3040328 -0.128504 0 24.53 112.2 /sub-10187/ses-1/reward1/seed/PCC/sub-10187_ses-1_reward1_connectivity_PCC_sm4.nii.gz \
10190 reward1 0.1600325 0.788162 1 22.29 111.42 /sub-10190/ses-1/reward1/seed/PCC/sub-10190_ses-1_reward1_connectivity_PCC_sm4.nii.gz \
10192 reward1 0.09959651 0.704829 1 19.07 112.98 /sub-10192/ses-1/reward1/seed/PCC/sub-10192_ses-1_reward1_connectivity_PCC_sm4.nii.gz \
***
10170 reward2 0.1763897 -0.961838 0 19.67 107.52 /sub-10170/ses-1/reward2/seed/PCC/sub-10170_ses-1_reward2_connectivity_PCC_sm4.nii.gz \
10181 reward2 0.1152683 1.538162 1 24.23 95.04 /sub-10181/ses-1/reward2/seed/PCC/sub-10181_ses-1_reward2_connectivity_PCC_sm4.nii.gz \
10183 reward2 0.1187985 -0.545171 0 18.13 109.86 /sub-10183/ses-1/reward2/seed/PCC/sub-10183_ses-1_reward2_connectivity_PCC_sm4.nii.gz \
10185 reward2 0.1855945 -0.295171 0 22.02 102.84 /sub-10185/ses-1/reward2/seed/PCC/sub-10185_ses-1_reward2_connectivity_PCC_sm4.nii.gz \
10186 reward2 0.2160566 0.038162 0 21.93 112.98 /sub-10186/ses-1/reward2/seed/PCC/sub-10186_ses-1_reward2_connectivity_PCC_sm4.nii.gz \
10187 reward2 0.2618169 -0.128504 0 24.53 112.2 /sub-10187/ses-1/reward2/seed/PCC/sub-10187_ses-1_reward2_connectivity_PCC_sm4.nii.gz \
10190 reward2 0.196132 0.788162 1 22.29 111.42 /sub-10190/ses-1/reward2/seed/PCC/sub-10190_ses-1_reward2_connectivity_PCC_sm4.nii.gz \
10192 reward2 0.08254328 0.704829 1 19.07 112.98 /sub-10192/ses-1/reward2/seed/PCC/sub-10192_ses-1_reward2_connectivity_PCC_sm4.nii.gz \
***

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Subject	Author	Posted
3dLME - Incorrect level coding in variable	dani2	June 13, 2020 03:22PM
Re: 3dLME - Incorrect level coding in variable	gang	June 13, 2020 04:49PM
Re: 3dLME - Incorrect level coding in variable	dani2	June 14, 2020 01:11PM
Re: 3dLME - Incorrect level coding in variable	dani2	June 14, 2020 01:19PM
Re: 3dLME - Incorrect level coding in variable	gang	June 14, 2020 05:06PM
Re: 3dLME - Incorrect level coding in variable	dani2	June 15, 2020 09:50PM
Re: 3dLME - Incorrect level coding in variable	dani2	June 16, 2020 11:26AM
Re: 3dLME - Incorrect level coding in variable	gang	June 16, 2020 12:40PM
Re: 3dLME - Incorrect level coding in variable	dani2	June 16, 2020 01:01PM
Re: 3dLME - Incorrect level coding in variable	dani2	June 17, 2020 10:45AM