OK, thank you. I tried setting OMP_NUM_THREADS to 4 with
set OMP_NUM_THREADS = 4
in my script. When I run @SSwarper, it still gives the output of
Default OMP_NUM_THREADS is 20
Do I need to set it differently?
After several passes of this script, I am finally down to one last subject with this issue, but this issue keeps happening to them regardless.
++ 3dQwarp: replacing source dataset with 3dAllineate result Sub_019_01_anat_warped/junk.SSwarper.EBdyxzaeQEc_TAL5_Allin.nii
++ Dataset zero-pad: xbot=15 xtop=14 ybot=13 ytop=22 zbot=15 ztop=9 voxels
++ +++++++++++ Begin warp optimization: base=/Volumes/Research_Data/Rhoades_Projects/RestingStatefMRI/Masks_Templates/MNI152_2009_template_SSW.nii.gz source=/Volumes/Research_Data/Rhoades_Projects/RestingStatefMRI/Raw_Data/Sub_019/Sub_019_01_anat_warped/junk.SSwarper.EBdyxzaeQEc_TAL5_Allin.nii
Fatal Signal 11 (SIGSEGV) received
IW3D_setup_for_improvement
IW3D_warpomatic
IW3D_warp_s2bim
3dQwarp
Bottom of Debug Stack
Thanks
Edited 2 time(s). Last edit at 07/02/2020 01:48PM by kxd344.
