Hello,
I tried what you suggested, but I am still getting the same Fatal Signal Errors which stops SSwarper from working. I have confirmed that the OpenMP thread count was reduced to 4.
+++ Command Echo:
3dQwarp -lite -base /Volumes/Research_Data/Rhoades_Projects/RestingStatefMRI/Masks_Templates/MNI152_2009_template_SSW.nii.gz[0] -source Sub_037_01_anat_warped/junk.SSwarper.PUsdWbXzVbV_AffSS.nii -iniwarp Sub_037_01_anat_warped/junk.SSwarper.PUsdWbXzVbV_TAL5_AWARP.nii -warpscale 1 -lpa -inilev 1 -maxlev 5 -wtgaus 4.5 -inedge -pblur -workhard:5:5 -nodset -prefix Sub_037_01_anat_warped/junk.SSwarper.PUsdWbXzVbV_QQ5.nii
++ SSW Step 6 ... piece 2
++ OpenMP thread count = 4
++ 3dQwarp: AFNI version=AFNI_20.1.14 (Jun 10 2020) [64-bit]
++ Authored by: Zhark the (Hermite) Cubically Warped
++ Dataset zero-pad: xbot=15 xtop=14 ybot=13 ytop=22 zbot=15 ztop=9 voxels
++ Weightizing the base image: FWHM = 4.5 (vox)
++ +++++++++++ Begin warp optimization: base=/Volumes/Research_Data/Rhoades_Projects/RestingStatefMRI/Masks_Templates/MNI152_2009_template_SSW.nii.gz source=/Volumes/Research_Data/Rhoades_Projects/RestingStatefMRI/Raw_Data/Sub_037/Sub_037_01_anat_warped/junk.SSwarper.PUsdWbXzVbV_AffSS.nii
Fatal Signal 11 (SIGSEGV) received
IW3D_setup_for_improvement
IW3D_warpomatic
IW3D_warp_s2bim
3dQwarp
Bottom of Debug Stack
Again, this doesn't happen to every subject, but it does happen to most subjects. Often to the same ones (but not always).
Thanks again!
Note: I think it might be related/limited to Mac, which I believe is Catalina.... maybe in a way it allocates memory? I tried a subject I was having problems with on a weaker dell laptop with less RAM, and it worked without an issue. I just wish I could solve the issue on the Mac since it has a much stronger processesor, GPU, and a lot more memory.
Edited 1 time(s). Last edit at 07/09/2020 07:45PM by kxd344.
