Hi,
I use the following 3dICC command and have an error of 'object 'runMeta' not found' below '*****'. Kindly help.
Phoebe
3dICC -prefix MDH_co2_pco2_max_decon_icc \
-mask MDH_brain_al_mask_xcereb.nii \
-model "1+Session+(1|Subj)" \
-dataTable \
Subj Session InputFile \
mdh001 CO2 mdh001_bold_co2_pco2_max_decon+tlrc'[0]' \
mdh003 CO2 mdh003_bold_co2_pco2_max_decon+tlrc'[0]' \
mdh004 CO2 mdh004_bold_co2_pco2_max_decon+tlrc'[0]' \
mdh005 CO2 mdh005_bold_co2_pco2_max_decon+tlrc'[0]' \
mdh008 CO2 mdh008_bold_co2_pco2_max_decon+tlrc'[0]' \
mdh009 CO2 mdh009_bold_co2_pco2_max_decon+tlrc'[0]' \
mdh010 CO2 mdh010_bold_co2_pco2_max_decon+tlrc'[0]' \
mdh011 CO2 mdh011_bold_co2_pco2_max_decon+tlrc'[0]' \
mdh013 CO2 mdh013_bold_co2_pco2_max_decon+tlrc'[0]' \
mdh014 CO2 mdh014_bold_co2_pco2_max_decon+tlrc'[0]' \
mdh017 CO2 mdh017_bold_co2_pco2_max_decon+tlrc'[0]' \
mdh001 REST mdh001_bold_rest_pco2_max_decon+tlrc'[0]' \
mdh003 REST mdh003_bold_rest_pco2_max_decon+tlrc'[0]' \
mdh004 REST mdh004_bold_rest_pco2_max_decon+tlrc'[0]' \
mdh005 REST mdh005_bold_rest_pco2_max_decon+tlrc'[0]' \
mdh008 REST mdh008_bold_rest_pco2_max_decon+tlrc'[0]' \
mdh009 REST mdh009_bold_rest_pco2_max_decon+tlrc'[0]' \
mdh010 REST mdh010_bold_rest_pco2_max_decon+tlrc'[0]' \
mdh011 REST mdh011_bold_rest_pco2_max_decon+tlrc'[0]' \
mdh013 REST mdh013_bold_rest_pco2_max_decon+tlrc'[0]' \
mdh014 REST mdh014_bold_rest_pco2_max_decon+tlrc'[0]' \
mdh017 REST mdh017_bold_rest_pco2_max_decon+tlrc'[0]'
*****
++++++++++++++++++++++++++++++++++++++++++++++++++++
***** Summary information of data structure *****
11 subjects : mdh001 mdh003 mdh004 mdh005 mdh008 mdh009 mdh010 mdh011 mdh013 mdh014 mdh017
22 response values
2 levels for factor Session : CO2 REST
Contingency tables of subject distributions among the categorical variables:
***** End of data structure information *****
++++++++++++++++++++++++++++++++++++++++++++++++++++
***** Summary information of data structure *****
11 subjects : mdh001 mdh003 mdh004 mdh005 mdh008 mdh009 mdh010 mdh011 mdh013 mdh014 mdh017
22 response values
2 levels for factor Session : CO2 REST
Contingency tables of subject distributions among the categorical variables:
***** End of data structure information *****
++++++++++++++++++++++++++++++++++++++++++++++++++++
Reading input files now...
Reading input files for effect estimates: Done!
Loading required package: lme4
Loading required package: Matrix
If the program hangs here for more than, for example, half an hour,
kill the process because the model specification or something else
is likely inappropriate.
[1] "Great, test run passed at voxel (53, 63, 50)!"
[1] "Start to compute 151 slices along Z axis. You can monitor the progress"
[1] "and estimate the total run time as shown below."
[1] "07/04/20 19:41:00.144"
Error in apply(comArr[, , kk, ], c(1, 2), runMeta, dataframe = lop$dataStr, :
object 'runMeta' not found
Calls: aperm -> apply -> match.fun
Execution halted
