AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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September 01, 2020 09:42AM
Hi Cesar, thank you for the input! I have considered 3dlss and discussed it elsewhere on the messageboard, though for a different type of analysis.

Just to clarify, I have about 333 trials, and over 1,300 1.5s TRs. (Where stimuli are repeated ever 4.5 seconds). So there are actually about 2.5 TRs between each stimulus presentation.

Given these numbers, would you recommend sticking with 3dDeconvolve unless their is high collinearlity across regressors? For instance, in the two subjects I've run so far there are (coincidentally) six pairs of regressors with medium-severity collinearity. (In the first subject, collinearity is between 6 pairs of stimuli, but in the second subjcect three of the six collinearity warning correspond to correlations between a simulus and motion regressorss.

Considering that their are 333 total trials, I imagine this is not super concerning. Would you agree or does this make you think 3dlss might be preferable?
Subject Author Posted

3dNetCorr on Event-Related Task fmri

jyaros August 31, 2020 05:24PM

Re: 3dNetCorr on Event-Related Task fmri

ptaylor August 31, 2020 05:42PM

Re: 3dNetCorr on Event-Related Task fmri

Cesar Caballero Gaudes August 31, 2020 06:09PM

Re: 3dNetCorr on Event-Related Task fmri

jyaros August 31, 2020 07:56PM

Re: 3dNetCorr on Event-Related Task fmri

Cesar Caballero Gaudes September 01, 2020 05:43AM

Re: 3dNetCorr on Event-Related Task fmri

jyaros September 01, 2020 09:42AM

Re: 3dNetCorr on Event-Related Task fmri

gang September 01, 2020 02:33PM

Re: 3dNetCorr on Event-Related Task fmri

jyaros September 07, 2020 01:49AM

Re: 3dNetCorr on Event-Related Task fmri

gang September 08, 2020 09:00AM

Re: 3dNetCorr on Event-Related Task fmri

jyaros September 08, 2020 05:35PM

Re: 3dNetCorr on Event-Related Task fmri

gang September 09, 2020 11:29AM

Re: 3dNetCorr on Event-Related Task fmri

jyaros September 11, 2020 12:22AM

Re: 3dNetCorr on Event-Related Task fmri

gang September 12, 2020 12:42PM

Re: 3dNetCorr on Event-Related Task fmri

jyaros September 13, 2020 09:51PM

Re: 3dNetCorr on Event-Related Task fmri

gang September 14, 2020 02:04PM