AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Daniel Glen
October 14, 2020 09:15PM
You have to populate the labels in the header of the atlas dataset. The program @Atlasize does this. Check the output has the correct with "3dinfo -atlas_points myatlas.nii". Avoid punctuation and symbols in the names of the region; two of the labels have commas and spaces in them, and that might cause problems.

If you would like, you may send me the datasets and a text files with labels and corresponding indices, and I'll help configure this for you. Other users will then be able to take advantage of our work. There is an atlas available for the rat described here:

[afni.nimh.nih.gov]



Edited 1 time(s). Last edit at 10/14/2020 09:24PM by Daniel Glen.
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Adding an atlas available for -Whereami queries Attachments

scarlatamj October 05, 2020 12:57PM

Re: Adding an atlas available for -Whereami queries

Daniel Glen October 06, 2020 01:17PM

Re: Adding an atlas available for -Whereami queries

scarlatamj October 14, 2020 01:13PM

Re: Adding an atlas available for -Whereami queries

Daniel Glen October 14, 2020 09:15PM

Re: Adding an atlas available for -Whereami queries

scarlatamj October 22, 2020 03:43PM