Hi, Some months ago I asked for your help on this error
(base) Mac-Pro-de-Neurociencia:Semantic_Priming neurociencia$ tcsh Script3A
++ 3dTstat: AFNI version=AFNI_20.3.00 (Oct 2 2020) [64-bit]
++ Authored by: KR Hammett & RW Cox
++ 3dcalc: AFNI version=AFNI_20.3.00 (Oct 2 2020) [64-bit]
++ Authored by: A cast of thousands
++ 3dTstat: AFNI version=AFNI_20.3.00 (Oct 2 2020) [64-bit]
++ Authored by: KR Hammett & RW Cox
++ 3dcalc: AFNI version=AFNI_20.3.00 (Oct 2 2020) [64-bit]
++ Authored by: A cast of thousands
++ 3dTstat: AFNI version=AFNI_20.3.00 (Oct 2 2020) [64-bit]
++ Authored by: KR Hammett & RW Cox
++ 3dcalc: AFNI version=AFNI_20.3.00 (Oct 2 2020) [64-bit]
++ Authored by: A cast of thousands
++ 3dTstat: AFNI version=AFNI_20.3.00 (Oct 2 2020) [64-bit]
++ Authored by: KR Hammett & RW Cox
++ 3dcalc: AFNI version=AFNI_20.3.00 (Oct 2 2020) [64-bit]
++ Authored by: A cast of thousands
++ 3dTstat: AFNI version=AFNI_20.3.00 (Oct 2 2020) [64-bit]
++ Authored by: KR Hammett & RW Cox
++ 3dcalc: AFNI version=AFNI_20.3.00 (Oct 2 2020) [64-bit]
++ Authored by: A cast of thousands
++ 3dTstat: AFNI version=AFNI_20.3.00 (Oct 2 2020) [64-bit]
++ Authored by: KR Hammett & RW Cox
++ 3dcalc: AFNI version=AFNI_20.3.00 (Oct 2 2020) [64-bit]
++ Authored by: A cast of thousands
-- Error SurfSmooth (SUMA_SurfSmooth.c:2128):
Failed to get mean fwhm
-- Error SurfSmooth (SUMA_SurfSmooth.c:2128):
Failed to get mean fwhm
-- Error SurfSmooth (SUMA_SurfSmooth.c:2128):
Failed to get mean fwhm
-- Error SurfSmooth (SUMA_SurfSmooth.c:2128):
Failed to get mean fwhm
-- Error SurfSmooth (SUMA_SurfSmooth.c:2128):
Failed to get mean fwhm
-- Error SurfSmooth (SUMA_SurfSmooth.c:2128):
Failed to get mean fwhm
-- Error SurfSmooth (SUMA_SurfSmooth.c:2128):
Failed to get mean fwhm
-- Error SurfSmooth (SUMA_SurfSmooth.c:2128):
Failed to get mean fwhm
-- Error SurfSmooth (SUMA_SurfSmooth.c:2128):
Failed to get mean fwhm
-- Error SurfSmooth (SUMA_SurfSmooth.c:2128):
Failed to get mean fwhm
-- Error SurfSmooth (SUMA_SurfSmooth.c:2128):
Failed to get mean fwhm
-- Error SurfSmooth (SUMA_SurfSmooth.c:2128):
Failed to get mean fwhm
I receive some guidance but the problem was never resolved. So I´m asking your help again.
This is the code I´m trying to run:
foreach conds ("Nopal" "Norel" "Rel" "Xnopal" "Xnorel" "Xrel") ## For each of the conditions in a priming task
foreach h (lh rh) ## For each hemisphere
SurfSmooth -spec $SUMA_path/mesh140.${subj}_"$h".spec \
-surf_A mesh140."$h".smoothwm.asc \
-met HEAT_07 -input $data_path/"$h"_${subj}_decon_$condition.BLOCK.ave_.niml.dset \
-target_fwhm 6 -Niter -1 \
-output $data_path/"$h"_${subj}_decon_$conds.BLOCK.ave_.blur6.niml.dset
end
end
Using a mesh in SUMA with this code:
## Create meshes
foreach h (lh rh) ## For each hemisphere
MapIcosahedron -spec ${subj}_"$h".spec -ld 140 -prefix mesh140. -NN_dset_map $h.aparc.a2009s.annot.1D.roi -all_surfs_spec -verb
end
Please help, I can´t smooth the activations and proceed to the ANOVA analysis.
