History of AFNI updates  

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October 08, 2020 10:56AM
Hi-

Sorry, that previous message slipped off my radar.

In this current case, you aren't using the standard mesh (using a created 140 instead of 141 one). Can I ask why you are using a self-created mesh that is very close to one standard mesh, but not a standard mesh?

In terms of the SurfSmooth error, let's test running SurfSmooth on your computer. In the AFNI Bootcamp dataset*, can you go to this directory, "AFNI_data6/FT_analysis/FT/SUMA/", and then run this command by copy+pasting into the terminal:
SurfSmooth \
     -spec std.141.FT_lh.spec \
     -surf_A std.141.lh.smoothwm.gii \
     -met HEAT_07  \
     -input std.141.lh.sulc.niml.dset \
     -target_fwhm 6 \
     -Niter -1 \
     -output TEST.niml.dset
Does that work for you?

--pt


-----------------------------------------
* If you don't have the Bootcamp directory-- eek! -- you can get+unpack it in your home directory via:
curl -O [afni.nimh.nih.gov]
tar xvzf CD.tgz
cd CD
tcsh s2.cp.files . ~
cd ..
Subject Author Posted

Still with SurfSmooth error

franciscoara October 07, 2020 09:21PM

Re: Still with SurfSmooth error

ptaylor October 08, 2020 10:56AM

Re: Still with SurfSmooth error

Daniel Glen October 08, 2020 11:59AM

Re: Still with SurfSmooth error

franciscoara October 09, 2020 08:19PM

Re: Still with SurfSmooth error

ptaylor October 09, 2020 09:13PM

Re: Still with SurfSmooth error

franciscoara October 14, 2020 12:41PM

Re: Still with SurfSmooth error

ptaylor October 14, 2020 05:01PM

Re: Still with SurfSmooth error

Daniel Glen October 14, 2020 08:56PM