Hi,
Yes, the TEST worked. Here are the three steps:
A) afni –ver output:
(base) Mac-Pro-de-Neurociencia:SUMA neurociencia$ afni -ver
Precompiled binary macos_10.12_local: Oct 2 2020 (Version AFNI_20.3.00 'Vespasian')
B) Surf Smooth response:
(base) Mac-Pro-de-Neurociencia:SUMA neurociencia$ SurfSmooth -spec std.141.FT_lh.spec -surf_A std.141.lh.smoothwm.gii -met HEAT_07 -input std.141.lh.sulc.niml.dset -target_fwhm 6 -Niter -1 -output TEST.niml.dset
++ Notice SUMA_SigForFWHM (SUMA_GeomComp.c:7400 @11:01:03):
Low Sigma/AvgLe, increased it to 0.500
Expected niter now: 89
Kernel Bandwidth / Average Edge Distance = 0.500000/0.816885 = 0.408443
Corresponding Kernel Numerator = 0.135335
++ Notice SurfSmooth (SUMA_SurfSmooth.c:2220 @11:01:03):
Smoothing kernel bandwidth (sigma) = 0.408443
#Final smoothing parameters from input:
#Niter Sigma OutputFWHM
0 0.4084 6.000
++ Notice SUMA_WriteSmoothingRecord (SUMA_GeomComp.c:7023 @11:01:03):
Writing FWHM progression history to TEST.niml.dset.1D.smrec ...
C) Commands used and response:
(base) Mac-Pro-de-Neurociencia:SUMA neurociencia$ 3dVol2Surf -spec std.141.Alejandro_rh.spec -surf_A std.141.rh.smoothwm.gii -surf_B std.141.rh.pial.gii -map_func ave -f_steps 15 -f_index voxels -sv Alejandro_SurfVol_Alnd_Exp+orig -grid_parent Alejandro_decon_Nopal.TENT.int.psc+orig -oob_value 0.0 -oob_index 0.0 -out_niml rh_Alejandro_decon_Nopal.TEMT.ave_.niml.dset
** surface name 'std.141.rh.smoothwm.gii' not found
This is previous step tan SurfSmooth. The thing is, the file std141.rh.smoothwm.gii is there in SUMA, but I can only advance from this step to SurfSmooth if I use my created mesh140.rh.smoothwm.asc. And then, in that step, SurfSmooth falls.
Thank you very much.
