AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
October 16, 2020 03:16PM
Hi Kauser,

That bandpass limit should take out another 140+ DoF. This suggests that you are not using afni_proc.py for the analysis. It would include the regressors, censoring and bandpassing in one step. It is typical that when band passing is done separately, it is not done correctly.
Would you show your 3dTproject command?

Regarding the white matter PCA regression, making a big difference does suggest there is BOLD signal coming from the white matter PCs (or ANATICOR), which would corrupt the results (in an unknown way).

But one basic problem is the voxel size, as Paul mentions. With such big voxels, a proper erosion is almost impossible, since it would often leave no voxels for the resgression. This includes the CSF, and notably, will vary quite a bit across subjects.

The mask you show does not look eroded to me. If that were already eroded by 2 voxels, then the original WM mask would include the dilation of this one by 2 voxels, and that would go way into the grey matter.

Tissue-based regression begs for smaller voxels.

- rick
Subject Author Posted

ANATICOR, WM and motion regressors Attachments

kausar October 12, 2020 01:06PM

Re: ANATICOR, WM and motion regressors

kausar October 15, 2020 07:53PM

Re: ANATICOR, WM and motion regressors

ptaylor October 15, 2020 09:00PM

Re: ANATICOR, WM and motion regressors Attachments

kausar October 15, 2020 11:05PM

Re: ANATICOR, WM and motion regressors

rick reynolds October 16, 2020 03:16PM

Re: ANATICOR, WM and motion regressors

kausar October 19, 2020 02:06AM

Re: ANATICOR, WM and motion regressors

rick reynolds October 19, 2020 11:00AM

Re: ANATICOR, WM and motion regressors

kausar October 20, 2020 11:39AM