Hi Afni experts,
I have a question, we did a anatomical mri to macaque, but the orientation looks not perfect coronal cut, and by extension in all the others planes. How I know, because I have a previous mri from several years back and the image are not similar, and from the horizontal view the hemispheres are very asymmetrical
I would like to reoriented the mri and reslices coronal view. I tried to do reorient by using
3dWarp -oblique2card T1w_shft.nii.gz
but I didn't see any change.
I though to align with a template as NMT_v2.0_sym_05mm.nii.gz
3dresample -master NMT_v2.0_sym_05mm.nii.gz -prefix T1_new.nii.gz -input T1w.nii.gz
The output was distorted images.
I am doing this because I need to detect the chamber position to plan electrophysiology recording, but the position from the mri don't make sense with the coordinate we used when we implanted it.
I appreciate any help
Fabian
