Hi Taylor,
The T1w from the current mri. I did before
3drefit -deoblique -orient LSP T1w.nii.gz
Because the orientation is like the image you see at the end.
Horizontal - Sagittal - Coronal view from afni.
If I applied 3drefit -deoblique -orient LSP then the orientation is agreed with the view in afni
I applied to the original mri
3dWarp -deoblique -disp_obl_xform_only DSET_NAME
output:
3.166011.2020102615023796294676121.0.0.0.nii.gz
++ 3dWarp: AFNI version=AFNI_20.2.14 (Aug 21 2020) [64-bit]
++ Authored by: RW Cox
# mat44 Obliquity Transformation ::
1.000000 0.000001 -0.000000 -0.000114
-0.000001 0.990024 -0.140901 -5.472626
0.000000 0.140901 0.990024 -18.687933
The original is from nifti file. The scanner we use is a siemmens prima 3T , the data is saved in dicom and nifti, I downloaded the nifti
Fabian
