Hi pt
Thanks very much for your recommendation.
After I fixed a few problems with python, the QC HTML finally appeared! It's a very nice interface to check the quality!
Sorry that I have 2 new questions. Now I use the MNI152_2009_template_SSW.nii.gz as the tlrc_base. I found that the output size is 64*76*64, which is different from the output using MNI_avg152 (61*73*61) as the base because of the different size of the 2 templates. And I found the size of the most atlas in MNI template is the same same as MNI_avg152. Can I simply use 3dresample employing the atlas or MNI_avg152 as the master to make the output size the same as the atlas so that I can extract time series in a brain region?
Another one is now I use the option as Example 6b suggest (https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/programs/afni_proc.py_sphx.html#example-6b-a-modern-task-example-with-preferable-options) to do the first-level analysis. Stats.+tlrc was not output anymore, only the stats_REML.+tlrc was output. So, is that right I just use the output in stats_REML.+tlrc to do the group-level analysis in the 3dMVM?

Zhang Lei



Edited 1 time(s). Last edit at 12/04/2020 10:34AM by Zhang-Lei.