Good afternoon everyone,
I'm having issues with @SSwarper... I get the crash below.
The command line used was: @SSwarper -input warped+orig -base MNI152_2009_template_SSW.nii.gz -subid anat_warp111 -odir "$rootdir"/FACES_DATA/"$i"
The anatomy input here was the output from 3dwarp -deoblique.
The anatomicals and EPI scans are acquired in very different orientations and are far apart- I was not involved in acquisition, so I'm not sure why.
thank you and please let me know if you need anything else,
Stu
*********------ CRASH LOG ------------------------------***********
Fatal Signal 11 (SIGSEGV) received
.......... recent internal history .........................................
+++++++mri_free [7]: {ENTRY (file=mri_free.c line=49) from IW3D_cleanup_improvement {912146 ms}
-------mri_free [7]: EXIT} (file=mri_free.c line=50) to IW3D_cleanup_improvement {912146 ms}
+++++++mri_free [7]: {ENTRY (file=mri_free.c line=49) from IW3D_cleanup_improvement {912146 ms}
-------mri_free [7]: EXIT} (file=mri_free.c line=50) to IW3D_cleanup_improvement {912146 ms}
+++++++IW3D_destroy [7]: {ENTRY (file=mri_nwarp.c line=960) from IW3D_cleanup_improvement {912146 ms}
-------IW3D_destroy [7]: EXIT} (file=mri_nwarp.c line=967) to IW3D_cleanup_improvement {912146 ms}
+++++++IW3D_destroy [7]: {ENTRY (file=mri_nwarp.c line=960) from IW3D_cleanup_improvement {912146 ms}
-------IW3D_destroy [7]: EXIT} (file=mri_nwarp.c line=967) to IW3D_cleanup_improvement {912146 ms}
+++++++IW3D_destroy [7]: {ENTRY (file=mri_nwarp.c line=960) from IW3D_cleanup_improvement {912146 ms}
-------IW3D_destroy [7]: EXIT} (file=mri_nwarp.c line=967) to IW3D_cleanup_improvement {912146 ms}
+++++++INCOR_destroy [7]: {ENTRY (file=thd_incorrelate.c line=1865) from IW3D_cleanup_improvement {912146 ms}
-------INCOR_destroy [7]: EXIT} (file=thd_incorrelate.c line=1867) to IW3D_cleanup_improvement {912146 ms}
------IW3D_cleanup_improvement [6]: EXIT} (file=mri_nwarp.c line=10245) to IW3D_setup_for_improvement {912146 ms}
++++++mri_to_float [6]: {ENTRY (file=mri_to_float.c line=19) from IW3D_setup_for_improvement {912146 ms}
+++++++mri_new_7D_generic [7]: {ENTRY (file=mri_new.c line=48) from mri_to_float {912146 ms}
-------mri_new_7D_generic [7]: EXIT} (file=mri_new.c line=143) to mri_to_float {912146 ms}
+++++++mri_add_name [7]: {ENTRY (file=mri_add_name.c line=19) from mri_to_float {912168 ms}
-------mri_add_name [7]: EXIT} (file=mri_add_name.c line=24) to mri_to_float {912168 ms}
------mri_to_float [6]: EXIT} (file=mri_to_float.c line=94) to IW3D_setup_for_improvement {912178 ms}
++++++mri_to_float [6]: {ENTRY (file=mri_to_float.c line=19) from IW3D_setup_for_improvement {912178 ms}
+++++++mri_new_7D_generic [7]: {ENTRY (file=mri_new.c line=48) from mri_to_float {912178 ms}
-------mri_new_7D_generic [7]: EXIT} (file=mri_new.c line=143) to mri_to_float {912178 ms}
+++++++mri_add_name [7]: {ENTRY (file=mri_add_name.c line=19) from mri_to_float {912200 ms}
-------mri_add_name [7]: EXIT} (file=mri_add_name.c line=24) to mri_to_float {912200 ms}
------mri_to_float [6]: EXIT} (file=mri_to_float.c line=94) to IW3D_setup_for_improvement {912213 ms}
++++++mri_interior_edgeize [6]: {ENTRY (file=mri_intedge.c line=19) from IW3D_setup_for_improvement {912213 ms}
+++++++mri_maxabs [7]: {ENTRY (file=mri_max.c line=98) from mri_interior_edgeize {912213 ms}
-------mri_maxabs [7]: EXIT} (file=mri_max.c line=129) to mri_interior_edgeize {912226 ms}
+++++++mri_new_7D_generic [7]: {ENTRY (file=mri_new.c line=48) from mri_interior_edgeize {912226 ms}
-------mri_new_7D_generic [7]: EXIT} (file=mri_new.c line=143) to mri_interior_edgeize {912226 ms}
mri_interior_edgeize -- call Extract_Gradient_Maxima_3D {912226 ms}
............................................................................
Last STATUS: call Extract_Gradient_Maxima_3D
mri_interior_edgeize
IW3D_setup_for_improvement
IW3D_warpomatic
IW3D_warp_s2bim
3dQwarp
** AFNI compile date = Dec 7 2020
** [[Precompiled binary macos_10.12_local: Dec 7 2020]]
** Program Crash **
