afni.nimh.nih.gov

Hi, Stuart--

Thanks for sharing the data.

It is a slightly odd dset in that there is a *lot* of nonbrain material, down to the shoulders. It also has some obliquity, which may/may not be a major issue.

I ran the following commands, and the resulting images look pretty good, though:

3dcopy anat+orig. anat_deob.nii

3drefit -deoblique anat_deob.nii

@SSwarper    \
    -input anat_deob.nii \
    -base MNI152_2009_template_SSW.nii.gz \
    -subid sub-001 \
    -odir o.aw_sub-001 \
    -giant_move

How does that seem?

--pt