AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 11, 2021 09:37PM
Dear Danial and Paul,

Thank you very much for pointing out the LabelDset field in the *.spec file, which is exactly what I want.
With some trial-and-errors, I was able to display HCP-MMP1 (https://figshare.com/articles/dataset/HCP-MMP1_0_projected_on_fsaverage/3498446) annotation in SUMA. In case someone search for this in the future, I read out the color table from the lh.HCP-MMP1.annot, manually generated a lh.HCP-MMP1.ctab file, then called FSread_annot -input lh.HCP-MMP1.annot -FSversion 2009 -FScmap lh.HCP-MMP1.ctab -FScmaprange 0 180 -dset lh.HCP-MMP1.annot.niml.dset, and substituted the LabelDset in the *.spec file.

The remaining questions are:
1) I'm not sure why FSread_annot cannot read out the color table from lh.HCP-MMP1.annot by itself.
2) Can we specify more than one LabelDset in *.spec? Simply duplicate the row doesn't work for sure.

@Danial, I guess both the GUI and DriveSuma can only load foreground dset, but not background dset like Convexity and aparc.a2009s? Can we load a background dset into SUMA?
@Paul, I didn't find the -extra_annot_labels option in @SUMA_Make_Spec_FS online doc or source (Version AFNI_19.0.24 'Tiberius').
Subject Author Posted

Custom crosshair label and background dset in SUMA

herrlich10 January 06, 2021 09:40PM

Re: Custom crosshair label and background dset in SUMA

Daniel Glen January 07, 2021 10:38AM

Re: Custom crosshair label and background dset in SUMA

ptaylor January 07, 2021 10:54AM

Re: Custom crosshair label and background dset in SUMA

herrlich10 January 11, 2021 09:37PM

Re: Custom crosshair label and background dset in SUMA

ptaylor January 12, 2021 11:53AM

Re: Custom crosshair label and background dset in SUMA

Daniel Glen January 12, 2021 05:48PM

Re: Custom crosshair label and background dset in SUMA

herrlich10 January 13, 2021 02:47AM