AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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MikeyMalina
January 12, 2021 03:43PM
Hello, the attached script is crashing, with the following error message:

++ Processing -nwarp ** FATAL ERROR: malloc (out of memory) error for dataset sub-brick #0

This memory error message is odd since I have more than enough memory-per-cpu going for this processing, it is only 20 minutes of task-MRI data, and I have processed more data with less memory in the past. Is anyone able to notice a problem in the script? It has worked for me no problem in the past (with different data as input). Or, has anyone had this error before and had it not pertain to an explicit memory issue on their cpu?
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Attachments:
open | download - proc.NLupdated.MJ_022_10012020-1.png (137.3 KB)
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Subject Author Posted

Odd crash and error during afniproc.py Attachments

MikeyMalina January 12, 2021 03:43PM

Re: Odd crash and error during afniproc.py

ptaylor January 12, 2021 04:34PM

Re: Odd crash and error during afniproc.py

MikeyMalina January 12, 2021 05:21PM

Re: Odd crash and error during afniproc.py

ptaylor January 12, 2021 05:56PM

Re: Odd crash and error during afniproc.py Attachments

MikeyMalina January 19, 2021 02:33PM

Re: Odd crash and error during afniproc.py

ptaylor January 19, 2021 03:54PM

Re: Odd crash and error during afniproc.py

MikeyMalina January 19, 2021 03:56PM

Re: Odd crash and error during afniproc.py

MikeyMalina January 28, 2021 11:19AM