Here is that code, thanks for the tip. As far as @djunct_overlap_check, my AFNI (19.0) does not seem to recognize it as a viable command. What version are you running it on?
#!/usr/bin/env tcsh
# created by uber_subject.py: version 0.37 (April 14, 2015)
# creation date: Thu Dec 31 14:20:32 2015
# set data directories
set top_dir = /project2/jschnei1/MRI/MJE/MJ_022_10012020
set anat_dir = $top_dir/Nifti
set epi_dir = $top_dir/ZShim
# set subject and group identifiers
set subj = MJ_022_10012020
set group_id = test
# run afni_proc.py to create a single subject processing script
afni_proc.py -subj_id $subj \
-script proc.$subj.IGT -scr_overwrite \
-blocks despike tshift align tlrc volreg blur mask scale regress \
-copy_anat $top_dir/nlWarp/022_10012020_anatWarped/anatSS.022_10012020.nii \
-anat_has_skull no \
-anat_follower anat_w_skull anat $anat_dir/MJ_022-S1_WIP_T1_W_3D_5_1.nii \
-tcat_remove_first_trs 0 \
-tshift_opts_ts -tpattern altplus \
-dsets $epi_dir/MJ022+orig.HEAD \
-volreg_align_to MIN_OUTLIER \
-tlrc_base $top_dir/nlWarp/MNI152_2009_template_SSW.nii.gz \
-volreg_align_e2a \
-volreg_tlrc_warp \
-tlrc_NL_warp \
-tlrc_NL_warped_dsets \
$top_dir/nlWarp/022_10012020_anatWarped/anatQQ.022_10012020.nii \
$top_dir/nlWarp/022_10012020_anatWarped/anatQQ.022_10012020.aff12.1D \
$top_dir/nlWarp/022_10012020_anatWarped/anatQQ.022_10012020_WARP.nii \
-blur_size 5.0 \
-mask_epi_anat yes \
-regress_stim_times \
$top_dir/control.txt \
$top_dir/losses.txt \
$top_dir/selAB.txt \
$top_dir/selCD.txt \
$top_dir/wins.txt \
-regress_stim_labels \
control losses selAB selCD wins \
-regress_basis 'GAM' \
-regress_censor_motion 0.3 \
-regress_apply_mot_types demean deriv \
-regress_motion_per_run \
-regress_opts_3dD \
-gltsym 'SYM: wins -losses' -glt_label 1 wins-losses \
-gltsym 'SYM: selAB -selCD' -glt_label 2 selAB-selCD \
-gltsym 'SYM: .5*selAB +.5*selCD -control' -glt_label 3 sel-control \
-regress_reml_exec \
-regress_anaticor_fast \
-regress_make_ideal_sum sum_ideal.1D \
-regress_est_blur_epits \
-regress_est_blur_errts \
-regress_run_clustsim no
